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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159104 (87 seq.)
>W1710802250
LJXT01000158
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
7703
7629
-
Met
CAT
[ENA]
¡û
>W1711021978
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
415571
415495
-
Met
CAT
[ENA]
¡û
>W1711027001
LRDB01000004
Bacteroidota
Roseivirga echinicomitans [LRDB]
174403
174327
-
Met
CAT
[ENA]
¡û
>W1711047550
LRPB01000034
Bacteroidota
Roseivirga seohaensis [LRPB]
72574
72650
+
Met
CAT
[ENA]
¡û
>W1711047603
LRPC01000031
Bacteroidota
Roseivirga spongicola [LRPC]
120967
120891
-
Met
CAT
[ENA]
¡û
>W1711252785
LYPF02000010
Bacteroidota
Crocinitomix algicola 182 [LYPF]
235
159
-
Met
CAT
[ENA]
¡û
>W131211910
ATNM01000071
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
3618
3544
-
Met
CAT
[ENA]
¡û
>W131223081
AUBU01000001
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
475863
475787
-
Met
CAT
[ENA]
¡û
>WENV180367540
OBOE01138941
[OBOE] marine metagenome; ENVO:00002010
1
75
+
Ile2
CAT
[ENA]
¡û
>W141039127
ALWO02000023
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
47528
47454
-
Met
CAT
[ENA]
¡û
>WENV181162741
OEIO01010663
[OEIO] marine metagenome; sea ice
793
869
+
Met
CAT
[ENA]
¡û
>WENV181233861
OFET01000163
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
45800
45874
+
Ile2
CAT
[ENA]
¡û
>WENV181306879
OFIN01014290
[OFIN] marine metagenome; sea ice
166
240
+
Ile2
CAT
[ENA]
¡û
>WENV181323908
OFKZ01029483
[OFKZ] marine metagenome; sea ice
309
235
-
Ile2
CAT
[ENA]
¡û
>W141238767
BBMJ01000001
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
25029
24953
-
Met
CAT
[ENA]
¡û
>W141238797
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
487900
487824
-
Met
CAT
[ENA]
¡û
>WENV182546267
OJBO01004857
[OJBO] seawater metagenome; Sea water
1903
1829
-
Ile2
CAT
[ENA]
¡û
>WENV182573499
OJFP01002810
[OJFP] seawater metagenome; Sea water
2615
2541
-
Ile2
CAT
[ENA]
¡û
>WENV182574150
OJFR01000173
[OJFR] seawater metagenome; Sea water
11001
11075
+
Ile2
CAT
[ENA]
¡û
>WENV182576157
OJFX01004303
[OJFX] seawater metagenome; Sea water
2479
2553
+
Ile2
CAT
[ENA]
¡û
>WENV182579977
OJGU01000851
[OJGU] seawater metagenome; Sea water
12913
12839
-
Ile2
CAT
[ENA]
¡û
>WENV182581212
OJGX01000887
[OJGX] seawater metagenome; Sea water
10701
10627
-
Ile2
CAT
[ENA]
¡û
>W141278934
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
447657
447583
-
Met
CAT
[ENA]
¡û
>WENV183062371
OLID01005335
[OLID] seawater metagenome; Sea water
1810
1884
+
Ile2
CAT
[ENA]
¡û
>WENV183615239
OOEA01133669
[OOEA] marine metagenome; sea ice
322
248
-
Met
CAT
[ENA]
¡û
>WENV183621226
OOFT01022317
[OOFT] marine metagenome; sea ice
736
662
-
Ile2
CAT
[ENA]
¡û
>WENV183621786
OOFU01060107
[OOFU] marine metagenome; sea ice
229
155
-
Ile2
CAT
[ENA]
¡û
>WENV183623615
OOGA01019709
[OOGA] marine metagenome; sea ice
420
494
+
Ile2
CAT
[ENA]
¡û
>WENV183624541
OOGD01035557
[OOGD] marine metagenome; sea ice
157
83
-
Ile2
CAT
[ENA]
¡û
>WENV183624860
OOGE01021215
[OOGE] marine metagenome; sea ice
123
49
-
Ile2
CAT
[ENA]
¡û
>WENV183626731
OOGJ01021607
[OOGJ] marine metagenome; seawater
68
142
+
Ile2
CAT
[ENA]
¡û
>WENV170155510
CEOG01037175
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1393
1469
+
Met
CAT
[ENA]
¡û
>WENV170192622
CEPF01037338
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2048
1972
-
Met
CAT
[ENA]
¡û
>WENV170296497
CESE01011543
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
172
96
-
Met
CAT
[ENA]
¡û
>WENV170304356
CESI01037070
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5011
4935
-
Met
CAT
[ENA]
¡û
>WENV170569007
FLMP01107149
[FLMP] seawater metagenome; seawater
113
37
-
Met
CAT
[ENA]
¡û
>WENV170612903
FUWD012738104
[FUWD] metagenome; unknown
77
3
-
Met
CAT
[ENA]
¡û
>WENV170783400
MAAC01016574
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
177
253
+
Met
CAT
[ENA]
¡û
>WENV170920366
MDTF01017384
[MDTF] marine metagenome; seawater
583
507
-
Met
CAT
[ENA]
¡û
>C181113276
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
924059
924135
+
Met
CAT
-
¡û
>C191127247
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
589653
589579
-
Met
CAT
-
¡û
>W141560706
JHXV01000025
Bacteroidota
Crocinitomix catalasitica ATCC 23190 [JHXV]
59599
59675
+
Met
CAT
[ENA]
¡û
>W1910785615
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2583226
2583300
+
Met
CAT
[ENA]
¡û
>W1910785735
MQVW01000027
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
243563
243489
-
Met
CAT
[ENA]
¡û
>W1910932873
NIUC01000001
Bacteroidota
Algoriphagus sp. XAY3209 [NIUC]
1069944
1070018
+
Met
CAT
[ENA]
¡û
>W1810296280
PTJE01000001
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
607653
607579
-
Met
CAT
[ENA]
¡û
>W1810356553
PVNA01000001
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
615289
615363
+
Met
CAT
[ENA]
¡û
>W1810685945
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
1362449
1362375
-
Met
CAT
[ENA]
¡û
>C151090017
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
4049851
4049927
+
Met
CAT
[Ensembl]
¡û
>W2010104650
BJYV01000004
Bacteroidota
Cyclobacterium qasimii NBRC 106168 [BJYV]
373655
373729
+
Ile2
CAT
[ENA]
¡û
>W2010894142
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2583226
2583300
+
Ile2
CAT
[ENA]
¡û
>W2010894262
MQVW01000027
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
243563
243489
-
Ile2
CAT
[ENA]
¡û
>W2010982187
NIUC01000001
Bacteroidota
Algoriphagus sp. XAY3209 [NIUC]
1069944
1070018
+
Ile2
CAT
[ENA]
¡û
>W2011455711
RMVE01000001
Bacteroidota
Nonlabens sp. 1Q3 [RMVE]
437153
437079
-
Ile2
CAT
[ENA]
¡û
>W2011492124
RWBG01000001
Bacteroidota
Mangrovimonas sp. HN-E26 [RWBG]
314468
314542
+
Ile2
CAT
[ENA]
¡û
>W2011634850
SMGS01000001
Bacteroidota
Roseivirga ehrenbergii DSM 102268 [SMGS]
948130
948204
+
Ile2
CAT
[ENA]
¡û
>W2011659154
SOEL01000003
Bacteroidota
Algoriphagus sp. ARW1R1 [SOEL]
286558
286484
-
Ile2
CAT
[ENA]
¡û
>W2012084560
VLOG01000049
Bacteroidota
Algoriphagus sp. hg1 [VLOG]
21745
21819
+
Ile2
CAT
[ENA]
¡û
>SRA1051661
SRR035098.52722
454 Sequencing (SRP001819)
342
268
-
Met
CAT
[SRA]
>W2012106072
VOOS01000006
Bacteroidota
Vicingus serpentipes NCIMB 15042 [VOOS]
3133
3059
-
Ile2
CAT
[ENA]
¡û
>W2012136976
VTDH01000012
Bacteroidota
Cyclobacterium marinum Atlantic-IS [VTDH]
17128
17204
+
Ile2
CAT
[ENA]
¡û
>W2012405947
WOFO01000008
Bacteroidota
Cyclobacterium sp. SYSU L10401 [WOFO]
263170
263244
+
Ile2
CAT
[ENA]
¡û
>W2110051476
BNAG01000002
Bacteroidota
Roseivirga thermotolerans CGMCC 1.15111 [BNAG]
391423
391349
-
Ile2
CAT
[ENA]
¡û
>W2110177825
JABFHF010000017
Bacteroidota
Aquiflexum lacus CUG 91378 [JABFHF]
98434
98360
-
Ile2
CAT
[ENA]
¡û
>W2110315293
JADFCO010000065
Bacteroidota
Nonlabens antarcticus JCM 14068 [JADFCO]
250581
250655
+
Ile2
CAT
[ENA]
¡û
>W2110330986
JADKYU010000809
Bacteroidota
Nonlabens mediterrranea TC4 [JADKYU]
688
762
+
Ile2
CAT
[ENA]
¡û
>W2110651319
JAHVHP010000001
Bacteroidota
Algoriphagus marincola DP5N14-6 [JAHVHP]
280076
280002
-
Ile2
CAT
[ENA]
¡û
>W2110663507
JAHXZQ010000008
Bacteroidota
Crocinitomix sp. GM2_3_6_6 [JAHXZQ]
30316
30242
-
Ile2
CAT
[ENA]
¡û
>C211168837
CP062973
Bacteroidota
Psychroflexus sp. ALD_RP9 [CP062973]
1359161
1359087
-
Ile2
CAT
-
¡û
>C231306952
CP091819
Bacteroidota
Paracrocinitomix mangrovi GM2-3-6-6 [CP091819]
2185094
2185020
-
Ile2
CAT
-
¡û
>C241081659
CP043633
Bacteroidota
Nonlabens sp. Ci31 [CP043633]
1041176
1041250
+
Ile2
CAT
-
¡û
>C241145708
CP050461
Bacteroidota
Nonlabens sp. SY33080 [CP050461]
2139931
2139857
-
Ile2
CAT
-
¡û
>C11105724
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
4090737
4090813
+
Met
CAT
[Ensembl]
¡û
>W1511387666
JSVA01000014
Bacteroidota
Roseivirga seohaensis D-25 [JSVA]
69313
69389
+
Met
CAT
[ENA]
¡û
>W1511564720
LADZ01000002
Bacteroidota
Flavobacteriales bacterium BRH_c54 [LADZ]
85846
85920
+
Met
CAT
[ENA]
¡û
>C161000286
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
826163
826239
+
Met
CAT
[Ensembl]
¡û
>C161034403
CP011373
Bacteroidota
Nonlabens sp. MIC269 [CP011373]
1539021
1539097
+
Met
CAT
[Ensembl]
¡û
>C131001111
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1582795
1582719
-
Met
CAT
[Ensembl]
¡û
>W1610584170
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
573050
573126
+
Met
CAT
[ENA]
¡û
>W1610666107
LJXT01000158
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
7703
7629
-
Met
CAT
[ENA]
¡û
>W1610870266
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
415571
415495
-
Met
CAT
[ENA]
¡û
>W1610875113
LRDB01000004
Bacteroidota
Roseivirga echinicomitans [LRDB]
174403
174327
-
Met
CAT
[ENA]
¡û
>W1610888679
LRPB01000034
Bacteroidota
Roseivirga seohaensis [LRPB]
72574
72650
+
Met
CAT
[ENA]
¡û
>W1610888732
LRPC01000031
Bacteroidota
Roseivirga spongicola [LRPC]
120967
120891
-
Met
CAT
[ENA]
¡û
>W1611017484
LYPF01000005
Bacteroidota
Crocinitomix algicola 182 [LYPF]
235
159
-
Met
CAT
[ENA]
¡û
>W1710582408
FQTW01000006
Bacteroidota
Psychroflexus salarius [FQTW]
166930
167006
+
Met
CAT
[ENA]
¡û
>W1710703318
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
573050
573126
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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