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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159472 (10 seq.)
>A171002943
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
582492
582567
+
Ile
GAT
-
¡û
>A17A001421
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1417968
1417873
-
Ser
GGA
-
¡û
>A179000604
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1417968
1417873
-
Ile
GAT
-
¡û
>At0199
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1423882
1423956
+
Ile
GAT
[Ensembl]
¡û
>At0264
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1380373
1380299
-
Ile
GAT
[Ensembl]
¡û
>At0313
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
402377
402283
-
Ile
GAT
[Ensembl]
¡û
>At0335
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
556155
556276
+
Ile
GAT
[Ensembl]
¡û
>WENV170574104
FLYM01005709
[FLYM] hot springs metagenome; Sediment
1581
1506
-
Ile
GAT
[ENA]
¢þ
>W1911075127
NMUE01000056
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
2325
2250
-
Ile
GAT
[ENA]
¡û
>W1911075147
NMUF01000022
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
13673
13748
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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