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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159475 (12 seq.)
>A171000173
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
1041161
1041086
-
Lys
TTT
-
¡û
>A171002937
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
201928
202005
+
Lys
TTT
-
¡û
>A17A000075
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1269610
1269710
+
Lys
TTT
-
¡û
>A17A001420
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1332465
1332363
-
Lys
TTT
-
¡û
>A179000307
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
446965
447061
+
Lys
TTT
-
¡û
>At0233
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1828728
1828651
-
Lys
TTT
[Ensembl]
¡û
>At0274
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1695343
1695266
-
Lys
TTT
[Ensembl]
¡û
>At0316
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
914057
913963
-
Lys
TTT
[Ensembl]
¡û
>At0362
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
807129
807029
-
Lys
TTT
[Ensembl]
¡û
>WENV170574114
FLYM01006966
[FLYM] hot springs metagenome; Sediment
5237
5160
-
Lys
TTT
[ENA]
¢þ
>W1911075139
NMUF01000015
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
38507
38430
-
Lys
TTT
[ENA]
¡û
>W1610000386
AAXQ01000001
Thermoproteota
Caldivirga maquilingensis IC-167 [AAXQ]
291073
291148
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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