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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159692 (53 seq.)
>W1710859914
LMCL01000030
Alphaproteobacteria
Aminobacter sp. DSM 101952 Root100 [LMCL]
107062
106986
-
His
GTG
[ENA]
¡û
>W1711385439
MEEF01000043
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
25568
25644
+
His
GTG
[ENA]
¡û
>W131167099
ARCZ01000001
Alphaproteobacteria
Hoeflea sp. 108 [ARCZ]
1036869
1036793
-
His
GTG
[ENA]
¡û
>W08005549
ABIA02000002
Alphaproteobacteria
Hoeflea phototrophica DFL-43 [ABIA]
149383
149459
+
His
GTG
[ENA]
¡û
>WENV181416955
OGCL01186304
[OGCL] hot springs metagenome; Hot spring water
325
249
-
His
GTG
[ENA]
¡û
>WENV170011962
APMI01106666
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1125
1201
+
His
GTG
[ENA]
¡û
>WENV170711401
LNFM01005091
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16622
16546
-
His
GTG
[ENA]
¡û
>C181129977
CP026265
Alphaproteobacteria
Aminobacter sp. MSH1 [CP026265]
4858496
4858572
+
His
GTG
-
¡û
>C181170993
CP028968
Alphaproteobacteria
Aminobacter sp. MSH1 [CP028968]
4858137
4858213
+
His
GTG
-
¡û
>C191090916
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
1300387
1300463
+
His
GTG
-
¡û
>W1911410983
NWUC01000001
Alphaproteobacteria
Pararhizobium sp. XC0140 [NWUC]
143661
143737
+
His
GTG
[ENA]
¡û
>W1911497545
OCPC01000005
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
353166
353090
-
His
GTG
[ENA]
¡û
>W1911810752
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
4170586
4170510
-
His
GTG
[ENA]
¡û
>W1810596943
QGGX01000017
Alphaproteobacteria
Aminobacter sp. AP02 [QGGX]
55063
55139
+
His
GTG
[ENA]
¡û
>SRA1014186
SRR023845.32243
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
167
+
His
GTG
[SRA]
>W2010302702
CABVLD010000016
Alphaproteobacteria
Rhizobium sp. EC-SD404 [CABVLD]
463493
463417
-
His
GTG
[ENA]
¡û
>W2010302995
CABVLK010000027
Alphaproteobacteria
Hoeflea sp. EC-HK425 [CABVLK]
2473286
2473210
-
His
GTG
[ENA]
¡û
>W2010493698
JAAKZF010000064
Alphaproteobacteria
Mesorhizobium camelthorni CCNWXJ 40-4 [JAAKZF]
118
42
-
His
GTG
[ENA]
¡û
>W2010493722
JAAKZG010000002
Alphaproteobacteria
Mesorhizobium zhangyense CGMCC 1.15528 [JAAKZG]
236389
236465
+
His
GTG
[ENA]
¡û
>W2010700049
JACHFO010000002
Alphaproteobacteria
Aminobacter sp. DSM 101952 [JACHFO]
656188
656264
+
His
GTG
[ENA]
¡û
>W2010700971
JACHGI010000011
Alphaproteobacteria
Aminobacter lissarensis DSM 17454 [JACHGI]
88773
88849
+
His
GTG
[ENA]
¡û
>W2010712945
JACHOT010000011
Alphaproteobacteria
Aminobacter niigataensis DSM 7050 [JACHOT]
7961
8037
+
His
GTG
[ENA]
¡û
>W2010712986
JACHOU010000013
Alphaproteobacteria
Aminobacter aganoensis DSM 7051 [JACHOU]
105479
105403
-
His
GTG
[ENA]
¡û
>W2010722707
JACICB010000006
Alphaproteobacteria
Aminobacter aminovorans DSM 10368 [JACICB]
75973
75897
-
His
GTG
[ENA]
¡û
>W2010740122
JACJHY010000017
Alphaproteobacteria
Aminobacter ciceronei DSM 15910 [JACJHY]
75386
75462
+
His
GTG
[ENA]
¡û
>W2010740171
JACJHZ010000017
Alphaproteobacteria
Aminobacter ciceronei DSM 17455 [JACJHZ]
75386
75462
+
His
GTG
[ENA]
¡û
>W2011137730
NWUC01000001
Alphaproteobacteria
Pararhizobium sp. XC0140 [NWUC]
143661
143737
+
His
GTG
[ENA]
¡û
>W2011158449
OCPC01000005
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
353166
353090
-
His
GTG
[ENA]
¡û
>W2011345428
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
4170586
4170510
-
His
GTG
[ENA]
¡û
>W2011626267
SLZO01000001
Alphaproteobacteria
Aminobacter aminovorans DSM 7048 [SLZO]
853415
853491
+
His
GTG
[ENA]
¡û
>W2011814472
UFSM01000001
Alphaproteobacteria
Aminobacter aminovorans NCTC10684 [UFSM]
4669501
4669577
+
His
GTG
[ENA]
¡û
>W2012136508
VSZS01000063
Alphaproteobacteria
Mesorhizobium sp. MaA-C15 [VSZS]
242274
242198
-
His
GTG
[ENA]
¡û
>W2012357064
WKFF01000007
Alphaproteobacteria
Aminobacter sp. MDW-2 [WKFF]
82794
82718
-
His
GTG
[ENA]
¡û
>W2012469013
WVVV01000003
Alphaproteobacteria
Chelativorans sp. ZYF759 [WVVV]
136573
136497
-
His
GTG
[ENA]
¡û
>W2110050709
BMZQ01000002
Alphaproteobacteria
Corticibacterium populi KCTC 42249 [BMZQ]
115735
115659
-
His
GTG
[ENA]
¡û
>W2110276098
JACVVX010000001
Alphaproteobacteria
Oryzicola mucosus Rool2 [JACVVX]
48249
48325
+
His
GTG
[ENA]
¡û
>W2110295080
JACZEP010000001
Alphaproteobacteria
Aminobacter carboxidus DSM 1086 [JACZEP]
53339
53263
-
His
GTG
[ENA]
¡û
>W2110513733
JAFLWW010000002
Alphaproteobacteria
Aminobacter anthyllidis LMG 26462 [JAFLWW]
698454
698530
+
His
GTG
[ENA]
¡û
>W2110514132
JAFMNX010000001
Alphaproteobacteria
Tianweitania sp. BSSL-BM11 [JAFMNX]
401983
402059
+
His
GTG
[ENA]
¡û
>W2110518005
JAFNIO010000043
Alphaproteobacteria
Phyllobacteriaceae bacterium CO17 [JAFNIO]
42678
42754
+
His
GTG
[ENA]
¡û
>W2110556274
JAGIYY010000002
Alphaproteobacteria
Tianweitania sediminis Z8 [JAGIYY]
179062
179138
+
His
GTG
[ENA]
¡û
>W2110668807
JAICBX010000002
Alphaproteobacteria
Hoeflea sp. WL0058 [JAICBX]
291445
291369
-
His
GTG
[ENA]
¡û
>C211130581
CP060197
Alphaproteobacteria
Aminobacter sp. MDW-2 [CP060197]
5470978
5471054
+
His
GTG
-
¡û
>C211157128
CP062112
Alphaproteobacteria
Aminobacter sp. SR38 [CP062112]
1774265
1774341
+
His
GTG
-
¡û
>C231556985
CP114190
Alphaproteobacteria
Aminobacter sp. NyZ550 [CP114190]
5166022
5166098
+
His
GTG
-
¡û
>C241387110
OX341517
Alphaproteobacteria
Aminobacter niigataensis MD1 [OX341517]
4517670
4517746
+
His
GTG
-
¡û
>W2310024287
BSNO01000001
Alphaproteobacteria
Rhizobium albus NBRC 110149 [BSNO]
521922
521998
+
His
GTG
[ENA]
¡û
>W1511347495
JRJG01000105
Alphaproteobacteria
Hoeflea sp. BAL378 [JRJG]
22673
22749
+
His
GTG
[ENA]
¡û
>W1511564340
LADQ01000233
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
14280
14356
+
His
GTG
[ENA]
¡û
>C161081619
CP015005
Alphaproteobacteria
Aminobacter aminovorans KCTC 2477 [CP015005]
5286126
5286202
+
His
GTG
[Ensembl]
¡û
>W121023507
AHAM01000210
Alphaproteobacteria
Mesorhizobium alhagi CCNWXJ12-2 [AHAM]
29457
29533
+
His
GTG
[ENA]
¡û
>W1610722260
LMCL01000030
Alphaproteobacteria
Aminobacter sp. DSM 101952 Root100 [LMCL]
107062
106986
-
His
GTG
[ENA]
¡û
>W1710578135
FPBI01000009
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
155433
155509
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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