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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159797 (48 seq.)
>W1710871592
LMLK01000003
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
408336
408412
+
Pro
GGG
[ENA]
¡û
>WENV170000295
AEWW01004558
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
2830
2906
+
Pro
GGG
[ENA]
¡û
>WENV170001418
AGFS01038101
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
61
137
+
Pro
GGG
[ENA]
¡û
>C191148326
CP036175
Gammaproteobacteria
Klebsiella huaxiensis WCHKl090001 [CP036175]
1826659
1826583
-
Pro
GGG
-
¡û
>W141809824
JPRU01000002
Gammaproteobacteria
Buttiauxella noackiae agrestis [JPRU]
983060
983136
+
Pro
GGG
[ENA]
¡û
>W1910576082
JRZZ01000042
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
24002
24078
+
Pro
GGG
[ENA]
¡û
>W1911492941
OBEF01000003
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
164754
164678
-
Pro
GGG
[ENA]
¡û
>W1911824471
QZWH01000038
Gammaproteobacteria
Buttiauxella izardii CCUG 35510 [QZWH]
39329
39253
-
Pro
GGG
[ENA]
¡û
>W1810053202
PDDA01000015
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
275229
275153
-
Pro
GGG
[ENA]
¡û
>W1810266251
PQVR01000008
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
62850
62926
+
Pro
GGG
[ENA]
¡û
>W1810266330
PQVS01000009
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
146602
146678
+
Pro
GGG
[ENA]
¡û
>W1810266664
PQVW01000019
Gammaproteobacteria
Lelliottia aquatilis 6331-17 [PQVW]
34938
34862
-
Pro
GGG
[ENA]
¡û
>W1810475871
QAJT01000001
Gammaproteobacteria
Klebsiella huaxiensis WCHKl090001 [QAJT]
222326
222250
-
Pro
GGG
[ENA]
¡û
>W1810658313
QJJG01000001
Gammaproteobacteria
Klebsiella oxytoca 67 [QJJG]
360956
360880
-
Pro
GGG
[ENA]
¡û
>W2010193687
CABGGN010000001
Gammaproteobacteria
Klebsiella sp. WCHKl090001 [CABGGN]
239283
239359
+
Pro
GGG
[ENA]
¡û
>W2010193852
CABGGQ010000001
Gammaproteobacteria
Klebsiella sp. WCHKl090001 [CABGGQ]
351880
351804
-
Pro
GGG
[ENA]
¡û
>W2010194362
CABGGW010000012
Gammaproteobacteria
Klebsiella sp. WCHKl090001 [CABGGW]
364829
364905
+
Pro
GGG
[ENA]
¡û
>W2010198246
CABGML010000001
Gammaproteobacteria
Lelliottia amnigena 4928STDY7071390 [CABGML]
924046
924122
+
Pro
GGG
[ENA]
¡û
>W2010253027
CABIZV020000005
Gammaproteobacteria
Enterobacteriaceae bacterium [CABIZV]
334524
334448
-
Pro
GGG
[ENA]
¡û
>W2010303748
CABVOV010000009
Gammaproteobacteria
Buttiauxella agrestis Marseille-P9829 [CABVOV]
339591
339667
+
Pro
GGG
[ENA]
¡û
>W2010319581
CACSIW010000002
Gammaproteobacteria
Bacillus sp. 18070 [CACSIW]
311863
311787
-
Pro
GGG
[ENA]
¡û
>W2010646877
JABXPX010000001
Gammaproteobacteria
Klebsiella sp. RHBSTW-00465 [JABXPX]
5813242
5813318
+
Pro
GGG
[ENA]
¡û
>W2010647966
JABXQS010000001
Gammaproteobacteria
Klebsiella sp. RHBSTW-00215 [JABXQS]
5706636
5706712
+
Pro
GGG
[ENA]
¡û
>W2010761647
JRZZ01000042
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
24002
24078
+
Pro
GGG
[ENA]
¡û
>W2011153892
OBEF01000003
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
164754
164678
-
Pro
GGG
[ENA]
¡û
>W2011351049
QZWH01000038
Gammaproteobacteria
Buttiauxella izardii CCUG 35510 [QZWH]
39329
39253
-
Pro
GGG
[ENA]
¡û
>W2011471504
RPOH01000009
Gammaproteobacteria
Buttiauxella warmboldiae CCUG 35512 [RPOH]
18573
18649
+
Pro
GGG
[ENA]
¡û
>W2011658392
SODY01000004
Gammaproteobacteria
Buttiauxella sp. BIGb0552 [SODY]
360468
360392
-
Pro
GGG
[ENA]
¡û
>W2012356183
WJYE01000018
Gammaproteobacteria
Enterobacteriaceae bacterium RIT711 [WJYE]
76363
76439
+
Pro
GGG
[ENA]
¡û
>W2012374438
WLZX01000001
Gammaproteobacteria
Erwinia sp. J316 [WLZX]
1341085
1341161
+
Pro
GGG
[ENA]
¡û
>W2110132489
CAKAKG010000001
Gammaproteobacteria
Leclercia sp. Marseille-Q4284 [CAKAKG]
888963
888887
-
Pro
GGG
[ENA]
¡û
>W2110243448
JACONS010000005
Gammaproteobacteria
Erwinia persicina DOAB1061 [JACONS]
488027
487951
-
Pro
GGG
[ENA]
¡û
>W2110337970
JADMNK010000001
Gammaproteobacteria
Leclercia sp. EMC7 [JADMNK]
334554
334478
-
Pro
GGG
[ENA]
¡û
>W2110435178
JAENMT010000001
Gammaproteobacteria
Lelliottia amnigena TZW14 [JAENMT]
538074
538150
+
Pro
GGG
[ENA]
¡û
>W2110455841
JAEUXA010000001
Gammaproteobacteria
Erwinia aphidicola 18B1 [JAEUXA]
3722634
3722710
+
Pro
GGG
[ENA]
¡û
>W2110635860
JAHPJH010000005
Gammaproteobacteria
Acinetobacter sp. DF3-8 [JAHPJH]
222272
222196
-
Pro
GGG
[ENA]
¡û
>W2110657774
JAHWJA010000001
Gammaproteobacteria
Hafnia alvei FDAARGOS_1439 [JAHWJA]
3582937
3582861
-
Pro
GGG
[ENA]
¡û
>C211067632
CP046582
Gammaproteobacteria
Erwinia sp. E602 [CP046582]
1581580
1581504
-
Pro
GGG
-
¡û
>C211108903
CP056483
Gammaproteobacteria
Klebsiella sp. RHBSTW-00464 [CP056483]
2026034
2025958
-
Pro
GGG
-
¡û
>C231620321
CP119320
Gammaproteobacteria
Klebsiella huaxiensis [CP119320]
3107114
3107190
+
Pro
GGG
-
¡û
>C241110438
CP046509
Gammaproteobacteria
Erwinia sorbitola J780 [CP046509]
1505905
1505829
-
Pro
GGG
-
¡û
>WENV11100653
AEWW01004558
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
2830
2906
+
Pro
GGG
[ENA]
¡û
>WENV11101490
AGFS01038101
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
61
137
+
Pro
GGG
[ENA]
¡û
>W1511698597
LGHZ01000038
Gammaproteobacteria
Kluyvera genomosp. 1 L2 [LGHZ]
47778
47702
-
Pro
GGG
[ENA]
¡û
>W1610733938
LMLK01000003
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
408336
408412
+
Pro
GGG
[ENA]
¡û
>W1610994318
LXEO01000025
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
191366
191442
+
Pro
GGG
[ENA]
¡û
>W1610994375
LXEP01000007
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
51521
51597
+
Pro
GGG
[ENA]
¡û
>W1710693925
LAGP01000023
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
2650
2574
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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