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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159970 (105 seq.)
>W1710991297
LPXO01000022
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
1475
1399
-
Met
CAT
[ENA]
¡û
>W1711282577
LZNT01000014
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
103055
103131
+
Met
CAT
[ENA]
¡û
>W1712106668
NIVZ01000001
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
2782
2706
-
Met
CAT
[ENA]
¡û
>W1712106705
NIWA01000001
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
199998
200074
+
Met
CAT
[ENA]
¡û
>W1712106762
NIWB01000004
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
375372
375448
+
Met
CAT
[ENA]
¡û
>W1712106804
NIWC01000001
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
5702
5626
-
Met
CAT
[ENA]
¡û
>W131050068
AMWC01001649
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
393
469
+
Met
CAT
[ENA]
¡û
>C171033693
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
4125235
4125311
+
Met
CAT
-
¡û
>C171035446
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
3283992
3283916
-
Met
CAT
-
¡û
>WENV180105560
OAPD01097766
[OAPD] marine metagenome; 2010
381
305
-
Ile2
CAT
[ENA]
¡û
>WENV180285037
OBID01200469
[OBID] metagenome; sludge
51
127
+
Ile2
CAT
[ENA]
¡û
>W141065871
AQRC01000012
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
24169
24245
+
Met
CAT
[ENA]
¡û
>W141082509
AUNB01000040
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
117528
117604
+
Met
CAT
[ENA]
¡û
>WENV181222687
OFDC01000082
[OFDC] hot springs metagenome; Water
2838
2762
-
Ile2
CAT
[ENA]
¡û
>WENV181227179
OFDN01002879
[OFDN] hot springs metagenome; Water
8853
8929
+
Ile2
CAT
[ENA]
¡û
>WENV181414036
OGCK01202431
[OGCK] hot springs metagenome; hot spring sediment
491
415
-
Ile2
CAT
[ENA]
¡û
>W141199842
AYXI01000067
Alphaproteobacteria
Defluviimonas sp. 20V17 [AYXI]
150
74
-
Met
CAT
[ENA]
¡û
>WENV183512270
OMKS01000201
[OMKS] sediment metagenome; hot spring sediment
37191
37115
-
Ile2
CAT
[ENA]
¡û
>WENV183709100
PDWI01023822
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
106
182
+
Ile2
CAT
[ENA]
¡û
>WENV183712960
PDWI01120113
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
291
367
+
Ile2
CAT
[ENA]
¡û
>WENV183717765
PDWJ01001557
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8125
8201
+
Ile2
CAT
[ENA]
¡û
>WENV170014609
AYSL01000384
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
358
434
+
Met
CAT
[ENA]
¡û
>WENV170320325
CESQ01321394
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
153
229
+
Met
CAT
[ENA]
¡û
>WENV170680830
LFEF01025547
[LFEF] freshwater metagenome; waterbloom
367
443
+
Met
CAT
[ENA]
¡û
>WENV170709839
LNFM01000792
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
29054
28978
-
Met
CAT
[ENA]
¡û
>WENV170709925
LNFM01000925
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
51758
51682
-
Met
CAT
[ENA]
¡û
>WENV170710665
LNFM01002347
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27049
27125
+
Met
CAT
[ENA]
¡û
>WENV170714420
LNFM01072736
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
88
12
-
Met
CAT
[ENA]
¡û
>WENV170962313
MRWF01011523
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
390
314
-
Met
CAT
[ENA]
¡û
>WENV170963834
MRWG01000912
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
7846
7770
-
Met
CAT
[ENA]
¡û
>C191123071
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
3753652
3753576
-
Met
CAT
-
¡û
>W1910549891
FZQB01000020
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
6243
6167
-
Met
CAT
[ENA]
¡û
>W1911538648
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
1662462
1662538
+
Met
CAT
[ENA]
¡û
>W1911638519
PVWS01000002
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
198145
198069
-
Met
CAT
[ENA]
¡û
>W1911696783
QMJY01000079
Alphaproteobacteria
Rhodobacter sp. YIM 73036 [QMJY]
14452
14528
+
Met
CAT
[ENA]
¡û
>W1911705499
QOKZ01000001
Alphaproteobacteria
Paracoccus sp. 4-2 [QOKZ]
542291
542367
+
Met
CAT
[ENA]
¡û
>W1911810977
QZCG01000013
Alphaproteobacteria
Paracoccus sp. 1011MAR3C25 [QZCG]
85226
85150
-
Met
CAT
[ENA]
¡û
>W1810061260
PDNI01000036
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
198305
198229
-
Met
CAT
[ENA]
¡û
>W1810120336
PHSN01000005
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
289443
289367
-
Met
CAT
[ENA]
¡û
>W1810268895
PRDS01000003
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
167526
167450
-
Met
CAT
[ENA]
¡û
>W1810351360
PVEP01000001
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
135478
135402
-
Met
CAT
[ENA]
¡û
>W1810385278
PXNQ01000011
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
42862
42938
+
Met
CAT
[ENA]
¡û
>W1810477605
QAOY01000001
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
437101
437025
-
Met
CAT
[ENA]
¡û
>W1810503951
QBKN01000008
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
157846
157922
+
Met
CAT
[ENA]
¡û
>W1810667445
QJPK01000040
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
12959
13035
+
Met
CAT
[ENA]
¡û
>W2010419563
FXYH01000004
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
82034
82110
+
Ile2
CAT
[ENA]
¡û
>W2010431652
FZQB01000020
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
6243
6167
-
Ile2
CAT
[ENA]
¡û
>W2010489521
JAAJBD010000001
Alphaproteobacteria
Boseongicola sp. TAW-CT132 [JAAJBD]
1035550
1035626
+
Ile2
CAT
[ENA]
¡û
>W2010520726
JAANHS010000017
Alphaproteobacteria
Rhodobacter sp. M37P [JAANHS]
19569
19493
-
Ile2
CAT
[ENA]
¡û
>W2010526833
JAANYX010000011
Alphaproteobacteria
Mameliella sp. LZ-28 [JAANYX]
365327
365403
+
Ile2
CAT
[ENA]
¡û
>W2010725919
JACIEO010000001
Alphaproteobacteria
Mameliella alba DSM 104732 [JACIEO]
679323
679399
+
Ile2
CAT
[ENA]
¡û
>W2010732297
JACIJU010000001
Alphaproteobacteria
Mameliella alba DSM 106184 [JACIJU]
776545
776621
+
Ile2
CAT
[ENA]
¡û
>W2011168878
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
1662462
1662538
+
Ile2
CAT
[ENA]
¡û
>W2011230245
PVWS01000002
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
198145
198069
-
Ile2
CAT
[ENA]
¡û
>W2011235173
QAEF01000005
Alphaproteobacteria
Mameliella alba Ep20 [QAEF]
436374
436298
-
Ile2
CAT
[ENA]
¡û
>W2011276831
QMJY01000079
Alphaproteobacteria
Rhodobacter sp. YIM 73036 [QMJY]
14452
14528
+
Ile2
CAT
[ENA]
¡û
>W2011279923
QOKZ01000001
Alphaproteobacteria
Paracoccus sp. 4-2 [QOKZ]
542291
542367
+
Ile2
CAT
[ENA]
¡û
>W2011345635
QZCG01000013
Alphaproteobacteria
Paracoccus sp. 1011MAR3C25 [QZCG]
85226
85150
-
Ile2
CAT
[ENA]
¡û
>W2011353999
RAPJ01000024
Alphaproteobacteria
Salipiger sp. D13 [RAPJ]
45851
45927
+
Ile2
CAT
[ENA]
¡û
>W2011460684
RPEN01000158
Alphaproteobacteria
Pseudorhodobacter sp. E13 [RPEN]
234402
234326
-
Ile2
CAT
[ENA]
¡û
>W2011555379
SELP01000001
Alphaproteobacteria
Loktanella sp. IMCC34160 [SELP]
362642
362718
+
Ile2
CAT
[ENA]
¡û
>W2011620102
SLVM01000026
Alphaproteobacteria
Rhodovulum steppense DSM 21153 [SLVM]
17286
17210
-
Ile2
CAT
[ENA]
¡û
>W2011653688
SOAP01000002
Alphaproteobacteria
Tropicibacter phthalicicus DSM 26923 [SOAP]
402259
402183
-
Ile2
CAT
[ENA]
¡û
>W2011694748
STGH01000004
Alphaproteobacteria
Rhodobacter sp. SY28-1 [STGH]
154979
154903
-
Ile2
CAT
[ENA]
¡û
>W2012088693
VMDS01000009
Alphaproteobacteria
Rhodobacter sp. SYSU G02092 [VMDS]
37053
37129
+
Ile2
CAT
[ENA]
¡û
>W2012088737
VMDT01000009
Alphaproteobacteria
Rhodobacter sp. SYSU G02094 [VMDT]
37053
37129
+
Ile2
CAT
[ENA]
¡û
>W2012088772
VMDU01000009
Alphaproteobacteria
Rhodobacter sp. SYSU G03088 [VMDU]
43035
43111
+
Ile2
CAT
[ENA]
¡û
>W2012088814
VMDV01000009
Alphaproteobacteria
Rhodobacter sp. SYSU G02214 [VMDV]
35964
36040
+
Ile2
CAT
[ENA]
¡û
>W2012130716
VSIY01000005
Alphaproteobacteria
Boseongicola sp. HY14 [VSIY]
147829
147753
-
Ile2
CAT
[ENA]
¡û
>W2012352583
WJPO01000011
Alphaproteobacteria
Rhodovulum strictum DSM 11289 [WJPO]
76373
76297
-
Ile2
CAT
[ENA]
¡û
>W2110021935
BMEW01000006
Alphaproteobacteria
Salipiger profundus CGMCC 1.12377 [BMEW]
305875
305951
+
Ile2
CAT
[ENA]
¡û
>W2110022088
BMEZ01000009
Alphaproteobacteria
Roseivivax pacificus CGMCC 1.12410 [BMEZ]
157789
157865
+
Ile2
CAT
[ENA]
¡û
>W2110023819
BMGI01000002
Alphaproteobacteria
Maritimibacter lacisalsi CGMCC 1.12922 [BMGI]
6379
6303
-
Ile2
CAT
[ENA]
¡û
>W2110024148
BMGQ01000009
Alphaproteobacteria
Mameliella alba CGMCC 1.12986 [BMGQ]
77917
77841
-
Ile2
CAT
[ENA]
¡û
>W2110049110
BMYJ01000009
Alphaproteobacteria
Gemmobacter tilapiae KCTC 23310 [BMYJ]
123611
123535
-
Ile2
CAT
[ENA]
¡û
>W2110051231
BNAB01000009
Alphaproteobacteria
Acidimangrovimonas indica CGMCC 1.10859 [BNAB]
135808
135732
-
Ile2
CAT
[ENA]
¡û
>W2110423029
JAEKIS010000009
Alphaproteobacteria
Salipiger abyssi SY10-16 [JAEKIS]
43194
43270
+
Ile2
CAT
[ENA]
¡û
>W2110453614
JAESVN010000001
Alphaproteobacteria
Tabrizicola sp. DMG-N-6 [JAESVN]
88570
88646
+
Ile2
CAT
[ENA]
¡û
>W2110515336
JAFMPQ010000056
Alphaproteobacteria
Cognatishimia sp. F0-27 [JAFMPQ]
3418
3494
+
Ile2
CAT
[ENA]
¡û
>W2110555893
JAGISH010000005
Alphaproteobacteria
Sagittula sp. M10.9X [JAGISH]
111911
111987
+
Ile2
CAT
[ENA]
¡û
>W2110566645
JAGQDH010000004
Alphaproteobacteria
Roseovarius sp. SHN287 [JAGQDH]
43153
43077
-
Ile2
CAT
[ENA]
¡û
>W2110575094
JAGTUU010000001
Alphaproteobacteria
Aestuariicoccus sp. KMU-90 [JAGTUU]
365939
366015
+
Ile2
CAT
[ENA]
¡û
>W2110610781
JAHKNG010000022
Alphaproteobacteria
Paracoccus sp. XHP0099 [JAHKNG]
57678
57754
+
Ile2
CAT
[ENA]
¡û
>W2110612092
JAHKQB010000027
Alphaproteobacteria
Paracoccus sp. C2R09 [JAHKQB]
282945
282869
-
Ile2
CAT
[ENA]
¡û
>W2110641338
JAHRWL010000002
Alphaproteobacteria
Thalassococcus sp. CAU 1522 [JAHRWL]
689518
689594
+
Ile2
CAT
[ENA]
¡û
>W2110653822
JAHVJH010000005
Alphaproteobacteria
Mameliella alba DP1N28-5 [JAHVJH]
376573
376649
+
Ile2
CAT
[ENA]
¡û
>W2110654983
JAHVKE010000001
Alphaproteobacteria
Maritalea mobilis DP3N28-3 [JAHVKE]
816911
816987
+
Ile2
CAT
[ENA]
¡û
>W2110663960
JAHYSR010000025
Alphaproteobacteria
Paracoccus bogoriensis BOG6 [JAHYSR]
376
300
-
Ile2
CAT
[ENA]
¡û
>W2110701578
JAIUZY010000007
Alphaproteobacteria
Salipiger bermudensis AmN7-7 [JAIUZY]
11020
11096
+
Ile2
CAT
[ENA]
¡û
>W10106914
ACYY01000003
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
54571
54495
-
Met
CAT
[ENA]
¡û
>C231112519
CP067129
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [CP067129]
2016579
2016503
-
Ile2
CAT
-
¡û
>C231112641
CP067140
Alphaproteobacteria
Paracoccus saliphilus DSM 18447 [CP067140]
1967113
1967189
+
Ile2
CAT
-
¡û
>C241005294
AP022337
Alphaproteobacteria
Mameliella alba KU6B [AP022337]
2750570
2750646
+
Ile2
CAT
-
¡û
>C241253903
CP124616
Alphaproteobacteria
Tropicibacter oceani YMD87 [CP124616]
2679036
2679112
+
Ile2
CAT
-
¡û
>W2310019467
BROH01000004
Alphaproteobacteria
Sinisalibacter aestuarii B-399 [BROH]
200733
200657
-
Ile2
CAT
[ENA]
¡û
>W11109203
ACYY01000003
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
54571
54495
-
Met
CAT
[ENA]
¡û
>W1511387325
JSUQ01000004
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
213787
213863
+
Met
CAT
[ENA]
¡û
>W1610845969
LPXO01000022
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
1475
1399
-
Met
CAT
[ENA]
¡û
>W1710512321
FMZI01000001
Alphaproteobacteria
Mameliella alba [FMZI]
436981
436905
-
Met
CAT
[ENA]
¡û
>W1710529571
FNOB01000034
Alphaproteobacteria
Allgaiera indica [FNOB]
24430
24506
+
Met
CAT
[ENA]
¡û
>W1710530954
FNPF01000010
Alphaproteobacteria
Citreimonas salinaria [FNPF]
44145
44221
+
Met
CAT
[ENA]
¡û
>W1710558246
FOLR01000007
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
2310
2234
-
Met
CAT
[ENA]
¡û
>W1710599526
FTOU01000003
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
328203
328127
-
Met
CAT
[ENA]
¡û
>W1710609067
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
69252
69328
+
Met
CAT
[ENA]
¡û
>W1710626845
JPKW01000024
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
7774
7698
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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