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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160648 (65 seq.)
>W131043768
AMPS01000176
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
42814
42739
-
Arg
CCT
[ENA]
¡û
>C171074552
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
2631866
2631790
-
Arg
CCT
-
¡û
>C171074604
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
2659305
2659229
-
Arg
CCT
-
¡û
>C171074656
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
2615056
2614980
-
Arg
CCT
-
¡û
>C171074708
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
2631195
2631119
-
Arg
CCT
-
¡û
>C171074760
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
2659306
2659230
-
Arg
CCT
-
¡û
>C171074812
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
2630563
2630487
-
Arg
CCT
-
¡û
>C000499
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
3081907
3081831
-
Arg
CCT
[Ensembl]
¡û
>C009834
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
2630482
2630406
-
Arg
CCT
[Ensembl]
¡û
>WENV180344343
OBLK01353690
[OBLK] soil metagenome; Clay
211
135
-
Arg
CCT
[ENA]
¡û
>WENV181191713
OEPS010174948
[OEPS] soil metagenome; soil
452
379
-
Arg
CCT
[ENA]
¡û
>W141222897
BACU01000485
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
35181
35105
-
Arg
CCT
[ENA]
¡û
>WENV170111969
CEGC01000032
[CEGC] microbial mat metagenome; grass silage
6426
6350
-
Arg
CCT
[ENA]
¡û
>WENV170112096
CEGD01000369
[CEGD] microbial mat metagenome; grass silage
11487
11563
+
Arg
CCT
[ENA]
¡û
>WENV170710221
LNFM01001327
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
39766
39693
-
Arg
CCT
[ENA]
¡û
>W141462234
JFHO01000016
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
37150
37074
-
Arg
CCT
[ENA]
¡û
>C181058309
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
154802
154726
-
Arg
CCT
-
¡û
>W141561216
JHYG01000018
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
15836
15911
+
Arg
CCT
[ENA]
¡û
>W09105126
AAOO01000014
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
83513
83589
+
Arg
CCT
[ENA]
¡û
>W141803720
JPGX01000341
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
1394
1470
+
Arg
CCT
[ENA]
¡û
>W1911802543
QYUK01000008
Alphaproteobacteria
Oleomonas sp. K1W22B-8 [QYUK]
158897
158973
+
Arg
CCT
[ENA]
¡û
>W1810603349
QGLE01000002
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
184359
184283
-
Arg
CCT
[ENA]
¡û
>C151004024
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
2634013
2633937
-
Arg
CCT
[Ensembl]
¡û
>C151004083
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2638189
2638113
-
Arg
CCT
[Ensembl]
¡û
>C151004135
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2659436
2659360
-
Arg
CCT
[Ensembl]
¡û
>W2010324578
CACTIA010000005
Alphaproteobacteria
Acidiphilium sp. C61 [CACTIA]
1340956
1341032
+
Arg
CCT
[ENA]
¡û
>W2010370378
CAHJWU010000048
Alphaproteobacteria
Rhodospirillales bacterium [CAHJWU]
11349
11273
-
Arg
CCT
[ENA]
¡û
>W2010574368
JAAVSS010000006
Alphaproteobacteria
Haematospirillum jordaniae H6179 [JAAVSS]
15152
15076
-
Arg
CCT
[ENA]
¡û
>W2010574429
JAAVST010000004
Alphaproteobacteria
Haematospirillum jordaniae H6172 [JAAVST]
107031
107107
+
Arg
CCT
[ENA]
¡û
>W2010574475
JAAVSU010000003
Alphaproteobacteria
Haematospirillum jordaniae H6167 [JAAVSU]
107030
107106
+
Arg
CCT
[ENA]
¡û
>W2010574522
JAAVSV010000003
Alphaproteobacteria
Haematospirillum jordaniae H5569 [JAAVSV]
107030
107106
+
Arg
CCT
[ENA]
¡û
>W2010574572
JAAVSW010000005
Alphaproteobacteria
Haematospirillum sp. H4890 [JAAVSW]
124738
124814
+
Arg
CCT
[ENA]
¡û
>W2010574625
JAAVSX010000006
Alphaproteobacteria
Haematospirillum jordaniae H4555 [JAAVSX]
16038
15962
-
Arg
CCT
[ENA]
¡û
>W2010574676
JAAVSY010000007
Alphaproteobacteria
Haematospirillum sp. H4485 [JAAVSY]
91057
91133
+
Arg
CCT
[ENA]
¡û
>W2010574734
JAAVSZ010000020
Alphaproteobacteria
Haematospirillum jordaniae H4011 [JAAVSZ]
7436
7512
+
Arg
CCT
[ENA]
¡û
>W2010574774
JAAVTA010000007
Alphaproteobacteria
Haematospirillum sp. H1815 [JAAVTA]
66518
66442
-
Arg
CCT
[ENA]
¡û
>W2010574818
JAAVTB010000003
Alphaproteobacteria
Haematospirillum jordaniae 18-209 [JAAVTB]
189067
188991
-
Arg
CCT
[ENA]
¡û
>W2010574878
JAAVTC010000006
Alphaproteobacteria
Haematospirillum jordaniae 16-489 [JAAVTC]
148999
149075
+
Arg
CCT
[ENA]
¡û
>W2010574928
JAAVTD010000007
Alphaproteobacteria
Haematospirillum jordaniae 16-449 [JAAVTD]
15960
15884
-
Arg
CCT
[ENA]
¡û
>W2010574965
JAAVTE010000003
Alphaproteobacteria
Haematospirillum jordaniae 16-385 [JAAVTE]
189083
189007
-
Arg
CCT
[ENA]
¡û
>W2010575014
JAAVTF010000003
Alphaproteobacteria
Haematospirillum sp. 15-248 [JAAVTF]
91050
91126
+
Arg
CCT
[ENA]
¡û
>W2010731365
JACIIZ010000008
Alphaproteobacteria
Nitrospirillum iridis DSM 22198 [JACIIZ]
225603
225679
+
Arg
CCT
[ENA]
¡û
>W2011344174
QYUK01000008
Alphaproteobacteria
Oleomonas sp. K1W22B-8 [QYUK]
158897
158973
+
Arg
CCT
[ENA]
¡û
>W2011408209
RCZP01000008
Alphaproteobacteria
Roseomonas nepalensis S9.3B [RCZP]
133040
133116
+
Arg
CCT
[ENA]
¡û
>W2011522027
SACL01000002
Alphaproteobacteria
Rhodovarius sp. CCP-6 [SACL]
318057
318132
+
Arg
CCT
[ENA]
¡û
>W2012044154
VITN01000003
Alphaproteobacteria
Nitrospirillum amazonense BR 11880 [VITN]
235278
235202
-
Arg
CCT
[ENA]
¡û
>W2012044242
VITO01000023
Alphaproteobacteria
Nitrospirillum amazonense BR 11865 [VITO]
65514
65438
-
Arg
CCT
[ENA]
¡û
>W2012044355
VITQ01000037
Alphaproteobacteria
Nitrospirillum amazonense BR 11145 [VITQ]
5373
5449
+
Arg
CCT
[ENA]
¡û
>W2012044388
VITR01000007
Alphaproteobacteria
Nitrospirillum amazonense BR 11622 [VITR]
318127
318203
+
Arg
CCT
[ENA]
¡û
>W2012044502
VITT01000025
Alphaproteobacteria
Nitrospirillum amazonense BR 11140 [VITT]
57286
57362
+
Arg
CCT
[ENA]
¡û
>W2012044592
VITV01000004
Alphaproteobacteria
Nitrospirillum amazonense BR 12005 [VITV]
314549
314625
+
Arg
CCT
[ENA]
¡û
>W2110111767
CAJHNI010000005
Alphaproteobacteria
Acidiphilium sp. C61 [CAJHNI]
1340956
1341032
+
Arg
CCT
[ENA]
¡û
>W2110264439
JACTNF010000027
Alphaproteobacteria
Roseomonas sp. 1311 [JACTNF]
732
656
-
Arg
CCT
[ENA]
¡û
>W2110276062
JACVVW010000003
Alphaproteobacteria
Acidiphilium multivorum LMS [JACVVW]
40145
40069
-
Arg
CCT
[ENA]
¡û
>C211142352
CP061091
Alphaproteobacteria
Roseomonas sp. 1318 [CP061091]
735884
735960
+
Arg
CCT
-
¡û
>W2110734967
JAJDJU010000003
Alphaproteobacteria
Acidocella sp. KAb 2-4 [JAJDJU]
206003
206079
+
Arg
CCT
[ENA]
¡û
>C231047261
CP041716
Alphaproteobacteria
Acidiphilium multivorum JZ-6 [CP041716]
2026675
2026599
-
Arg
CCT
-
¡û
>W2310008063
BAPR01000077
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BAPR]
2274
2198
-
Arg
CCT
[ENA]
¡û
>C11100957
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
3435094
3435019
-
Arg
CCT
[Ensembl]
¡û
>W11157265
AFBX01000248
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
10878
10802
-
Arg
CCT
[ENA]
¡û
>W11170621
AFPR01000088
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
18574
18498
-
Arg
CCT
[ENA]
¡û
>C161073385
CP014525
Alphaproteobacteria
Haematospirillum jordaniae H5569 [CP014525]
428116
428040
-
Arg
CCT
[Ensembl]
¡û
>W1610041061
BANC01000112
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
31011
31087
+
Arg
CCT
[ENA]
¡û
>W1710038259
BANC01000112
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
31011
31087
+
Arg
CCT
[ENA]
¡û
>W1710584214
FQVJ01000038
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
2511
2435
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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