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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160661 (106 seq.)
>W1710893470
LNEU01000022
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
51120
51196
+
Met
CAT
[ENA]
¡û
>W1711413662
MGWQ01000141
Betaproteobacteria
Gallionellales bacterium GWA2_59_43 [MGWQ]
24316
24240
-
Met
CAT
[ENA]
¡û
>W1711413683
MGWR01000038
Betaproteobacteria
Gallionellales bacterium GWA2_60_142 [MGWR]
1622
1546
-
Met
CAT
[ENA]
¡û
>W1711421854
MIAE01000140
Betaproteobacteria
Sideroxydans sp. RIFOXYB12_FULL_59_6 [MIAE]
1409
1333
-
Met
CAT
[ENA]
¡û
>W1711430711
MIJG01000005
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
344582
344506
-
Met
CAT
[ENA]
¡û
>W1712110319
NJGV01000006
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
127925
127849
-
Met
CAT
[ENA]
¡û
>W131181042
ARNP01000095
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
32683
32759
+
Met
CAT
[ENA]
¡û
>W131181043
ARNP01000095
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
32819
32895
+
Met
CAT
[ENA]
¡û
>W131164440
ARAT01000141
Betaproteobacteria
Gallionella sp. SCGC AAA018-N21 [ARAT]
46377
46453
+
Met
CAT
[ENA]
¡û
>C010391
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
401305
401229
-
Met
CAT
[Ensembl]
¡û
>C011146
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
509462
509386
-
Met
CAT
[Ensembl]
¡û
>C171130502
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1941434
1941510
+
Met
CAT
-
¡û
>W141003817
AEEC02000009
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
74717
74641
-
Met
CAT
[ENA]
¡û
>WENV180304507
OBJI01094937
[OBJI] soil metagenome; soil
67
143
+
Met
CAT
[ENA]
¡û
>WENV180344643
OBLL01085351
[OBLL] soil metagenome; soil
59
135
+
Met
CAT
[ENA]
¡û
>WENV180851632
ODKV01129713
[ODKV] human metagenome; G_DNA_Stool
184
260
+
Met
CAT
[ENA]
¡û
>WENV181111645
OEEK01155365
[OEEK] human metagenome; G_DNA_Stool
156
80
-
Met
CAT
[ENA]
¡û
>WENV181144279
OEHO01001407
[OEHO] metagenome; unknown
962
886
-
Met
CAT
[ENA]
¡û
>WENV181184583
OEKM01000060
[OEKM] metagenome; 1998
1825
1749
-
Met
CAT
[ENA]
¡û
>WENV181902716
OGXW01081599
[OGXW] human gut metagenome; faeces
447
523
+
Met
CAT
[ENA]
¡û
>WENV181913989
OGYE01064077
[OGYE] human gut metagenome; faeces
91
167
+
Met
CAT
[ENA]
¡û
>W141241304
CAHF01000001
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
17438
17514
+
Met
CAT
[ENA]
¡û
>WENV183086632
OLJF01063215
[OLJF] metagenome; faeces
122
198
+
Met
CAT
[ENA]
¡û
>WENV183331249
OLWB01077706
[OLWB] human gut metagenome; faeces
251
175
-
Met
CAT
[ENA]
¡û
>WENV183575680
OOCI01005165
[OOCI] human gut metagenome; human gut
253
177
-
Met
CAT
[ENA]
¡û
>WENV183682739
ORMF010484763
[ORMF] groundwater metagenome; groundwater
140510
140586
+
Met
CAT
[ENA]
¡û
>WENV183691000
ORMF011683886
[ORMF] groundwater metagenome; groundwater
620
696
+
Met
CAT
[ENA]
¡û
>WENV183727205
PJTO01012825
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
590
514
-
Met
CAT
[ENA]
¡û
>WENV170202207
CEPQ01129131
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
236
312
+
Met
CAT
[ENA]
¡û
>WENV170565526
FJVX01001005
[FJVX] metagenome; soil
753
829
+
Met
CAT
[ENA]
¡û
>WENV170688980
LFRM01270403
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
295
371
+
Met
CAT
[ENA]
¡û
>WENV170709547
LNFM01000449
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
165372
165296
-
Met
CAT
[ENA]
¡û
>W141739269
JNNN01000073
Betaproteobacteria
Massilia sp. LC238 [JNNN]
45234
45310
+
Met
CAT
[ENA]
¡û
>W141739270
JNNN01000073
Betaproteobacteria
Massilia sp. LC238 [JNNN]
45371
45447
+
Met
CAT
[ENA]
¡û
>W09119196
ACDP01000008
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
7938
7862
-
Met
CAT
[ENA]
¡û
>W1911802897
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
2467077
2467153
+
Met
CAT
[ENA]
¡û
>W1810068146
PDZI01000001
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
582798
582722
-
Met
CAT
[ENA]
¡û
>W1810068147
PDZI01000001
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
582660
582584
-
Met
CAT
[ENA]
¡û
>W1810068264
PDZJ01000002
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
740578
740654
+
Met
CAT
[ENA]
¡û
>W1810068265
PDZJ01000002
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
740716
740792
+
Met
CAT
[ENA]
¡û
>W1810068564
PDZN01000008
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
245026
245102
+
Met
CAT
[ENA]
¡û
>W1810068565
PDZN01000008
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
245162
245238
+
Met
CAT
[ENA]
¡û
>W1810068647
PDZO02000009
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
6336
6260
-
Met
CAT
[ENA]
¡û
>W1810068648
PDZO02000009
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
6198
6122
-
Met
CAT
[ENA]
¡û
>W1810068709
PDZP01000004
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
91077
91001
-
Met
CAT
[ENA]
¡û
>W1810068710
PDZP01000004
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
90948
90872
-
Met
CAT
[ENA]
¡û
>W1810069736
PEBS01000011
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
10795
10719
-
Met
CAT
[ENA]
¡û
>W1810297235
PTLZ01000004
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
183528
183452
-
Met
CAT
[ENA]
¡û
>W1810326750
PUGF01000003
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
235782
235706
-
Met
CAT
[ENA]
¡û
>W1810887517
QUQN01000002
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
10652
10728
+
Met
CAT
[ENA]
¡û
>C151062603
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
4599226
4599302
+
Met
CAT
[Ensembl]
¡û
>W2010268949
CABKRR020000001
Betaproteobacteria
Noviherbaspirillum massiliense [CABKRR]
17438
17514
+
Met
CAT
[ENA]
¡û
>W2010288969
CABMNL010000001
Betaproteobacteria
Oxalobacter formigenes [CABMNL]
550226
550150
-
Met
CAT
[ENA]
¡û
>W2010446162
JAABOS010000010
Betaproteobacteria
Undibacterium sp. B2R-29 [JAABOS]
28013
27937
-
Met
CAT
[ENA]
¡û
>W2010534913
JAAOZT010000007
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JAAOZT]
347206
347130
-
Met
CAT
[ENA]
¡û
>W2010598612
JABFMQ010000002
Betaproteobacteria
Herbaspirillum sp. C9C3 [JABFMQ]
123270
123194
-
Met
CAT
[ENA]
¡û
>W2010678216
JACDJF010000001
Betaproteobacteria
Herbaspirillum sp. AP21 [JACDJF]
304690
304614
-
Met
CAT
[ENA]
¡û
>W2010702833
JACHHQ010000005
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JACHHQ]
138946
139022
+
Met
CAT
[ENA]
¡û
>W2010716970
JACHXS010000002
Betaproteobacteria
Massilia umbonata CECT 7753 [JACHXS]
620996
620920
-
Met
CAT
[ENA]
¡û
>W2010762381
JWJC01000019
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
78239
78163
-
Met
CAT
[ENA]
¡û
>W2010762626
JWZY01000008
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os49 [JWZY]
77657
77581
-
Met
CAT
[ENA]
¡û
>W2011344528
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
2467077
2467153
+
Met
CAT
[ENA]
¡û
>W2011375779
RBLK01000002
Betaproteobacteria
Herbaspirillum sp. XFZ15 10_5 [RBLK]
43272
43348
+
Met
CAT
[ENA]
¡û
>W2011413774
REGP01000002
Betaproteobacteria
bacterium CAVE-383 [REGP]
755952
755876
-
Met
CAT
[ENA]
¡û
>W2011641722
SMYL01000004
Betaproteobacteria
Oxalobacteraceae bacterium SA-152 [SMYL]
11527
11451
-
Met
CAT
[ENA]
¡û
>W2011647619
SNWF01000006
Betaproteobacteria
Herminiimonas fonticola DSM 18555 [SNWF]
183497
183421
-
Met
CAT
[ENA]
¡û
>W2011671359
SPNH01000036
Betaproteobacteria
Herbaspirillum sp. 3C11 [SPNH]
10652
10728
+
Met
CAT
[ENA]
¡û
>W2011671410
SPNI01000002
Betaproteobacteria
Herbaspirillum sp. 3R-11 [SPNI]
818926
818850
-
Met
CAT
[ENA]
¡û
>W2011671455
SPNJ01000002
Betaproteobacteria
Herbaspirillum sp. 3R11 [SPNJ]
818926
818850
-
Met
CAT
[ENA]
¡û
>W2012048189
VIWG01000014
Betaproteobacteria
Herbaspirillum huttiense 1147 [VIWG]
31519
31443
-
Met
CAT
[ENA]
¡û
>W2012135930
VSWE01000011
Betaproteobacteria
Herbaspirillum sp. CAH-3 [VSWE]
142193
142269
+
Met
CAT
[ENA]
¡û
>W2110028752
BMKG01000007
Betaproteobacteria
Massilia buxea CGMCC 1.15931 [BMKG]
259121
259045
-
Met
CAT
[ENA]
¡û
>W2110028753
BMKG01000007
Betaproteobacteria
Massilia buxea CGMCC 1.15931 [BMKG]
258959
258883
-
Met
CAT
[ENA]
¡û
>W2110049590
BMYT01000005
Betaproteobacteria
Undibacterium macrobrachii KCTC 23916 [BMYT]
24749
24673
-
Met
CAT
[ENA]
¡û
>W2110241639
JACOFU010000003
Betaproteobacteria
Undibacterium amnicola KCTC 52442 [JACOFU]
343680
343604
-
Met
CAT
[ENA]
¡û
>W2110241752
JACOFW010000016
Betaproteobacteria
Undibacterium seohonense KACC 16656 [JACOFW]
27239
27163
-
Met
CAT
[ENA]
¡û
>W2110241978
JACOGA010000019
Betaproteobacteria
Undibacterium sp. LX15W [JACOGA]
70426
70350
-
Met
CAT
[ENA]
¡û
>W2110242030
JACOGB010000009
Betaproteobacteria
Undibacterium sp. FT79W [JACOGB]
134269
134345
+
Met
CAT
[ENA]
¡û
>W2110392182
JADWMY010000002
Betaproteobacteria
Herbaspirillum sp. AP02 [JADWMY]
304690
304614
-
Met
CAT
[ENA]
¡û
>W2110431859
JAENGS010000009
Betaproteobacteria
Undibacterium sp. 14-3-2 [JAENGS]
10657
10581
-
Met
CAT
[ENA]
¡û
>W2110570762
JAGSPM010000003
Betaproteobacteria
Undibacterium sp. BYS107W [JAGSPM]
171148
171224
+
Met
CAT
[ENA]
¡û
>W2110638095
JAHQRJ010000001
Betaproteobacteria
Noviherbaspirillum sp. L7-7A [JAHQRJ]
2437878
2437954
+
Met
CAT
[ENA]
¡û
>C201000214
AP018441
Betaproteobacteria
Undibacterium sp. YM2 [AP018441]
1203477
1203401
-
Met
CAT
-
¡û
>C211001767
AP019536
Betaproteobacteria
Ferrigenium kumadai An22 [AP019536]
2102309
2102233
-
Met
CAT
-
¡û
>C211274243
CP070304
Betaproteobacteria
Glaciimonas sp. PAMC28666 [CP070304]
3139503
3139427
-
Met
CAT
-
¡û
>C231399244
CP098242
Betaproteobacteria
Oxalobacter vibrioformis WoOx3 [CP098242]
101607
101683
+
Met
CAT
-
¡û
>C231399321
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
930281
930205
-
Met
CAT
-
¡û
>C231399513
CP098247
Betaproteobacteria
Oxalobacter sp. JAC-2022 BA2 [CP098247]
581635
581559
-
Met
CAT
-
¡û
>C231399537
CP098248
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-1 [CP098248]
1429852
1429928
+
Met
CAT
-
¡û
>C231399612
CP098249
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-2 [CP098249]
620602
620526
-
Met
CAT
-
¡û
>C231399641
CP098250
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-3 [CP098250]
1765154
1765230
+
Met
CAT
-
¡û
>C231399690
CP098251
Betaproteobacteria
Oxalobacter sp. JAC-2022 OxK [CP098251]
1649295
1649371
+
Met
CAT
-
¡û
>C231399740
CP098252
Betaproteobacteria
Oxalobacter sp. JAC-2022 Va3 [CP098252]
1617973
1618049
+
Met
CAT
-
¡û
>C241312815
CP133777
Betaproteobacteria
Actimicrobium sp. CCC2.4 [CP133777]
4110923
4110999
+
Met
CAT
-
¡û
>C10107844
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
915530
915454
-
Met
CAT
[Ensembl]
¡û
>W1511480676
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
2168664
2168588
-
Met
CAT
[ENA]
¡û
>W11143208
AEPR01000162
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
3668
3744
+
Met
CAT
[ENA]
¡û
>W1511683766
LFLS01000008
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
134320
134396
+
Met
CAT
[ENA]
¡û
>W1511683883
LFLU01000005
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
179900
179824
-
Met
CAT
[ENA]
¡û
>C161043180
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
5461341
5461417
+
Met
CAT
-
¡û
>C161060484
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
790586
790510
-
Met
CAT
[Ensembl]
¡û
>W121086366
AKJW01000018
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
31748
31672
-
Met
CAT
[ENA]
¡û
>W121124655
BAFJ01000008
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
662755
662831
+
Met
CAT
[ENA]
¡û
>W1610753736
LNEU01000022
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
51120
51196
+
Met
CAT
[ENA]
¡û
>W1710545133
FOBG01000001
Betaproteobacteria
Duganella sp. CF402 [FOBG]
3314696
3314772
+
Met
CAT
[ENA]
¡û
>W1710556456
FOKF01000024
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
62518
62594
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK