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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161461 (75 seq.)
>W1711229208
LXYE02000019
Bacteroidota
Labilibacter marinus [LXYE]
214460
214384
-
Met
CAT
[ENA]
¡û
>W1711393039
MEOE01000023
Bacteroidota
Bacteroidetes bacterium GWF2_33_16 [MEOE]
150680
150606
-
Met
CAT
[ENA]
¡û
>w023335
AAXU01000005
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
1480
1556
+
Met
CAT
[ENA]
¡û
>WENV180693093
OCZS010998377
[OCZS] soil metagenome; soil
104
180
+
Ile2
CAT
[ENA]
¡û
>WENV181231282
OFEK01017903
[OFEK] activated sludge metagenome; Anaerobic digester
129
55
-
Ile2
CAT
[ENA]
¡û
>WENV181320955
OFKJ01001764
[OFKJ] marine metagenome; sea ice
910
836
-
Ile2
CAT
[ENA]
¡û
>WENV181324574
OFLF01003665
[OFLF] marine metagenome; melt pond
6
80
+
Ile2
CAT
[ENA]
¡û
>WENV181385458
OFRI01091621
[OFRI] wastewater metagenome; Exp Tend VB 90WW
179
105
-
Ile2
CAT
[ENA]
¡û
>W141220964
AZYH01000014
Bacteroidota
Saccharicrinis fermentans DSM 9555 = JCM 21142 [AZYH]
1794610
1794534
-
Met
CAT
[ENA]
¡û
>W141228716
BAMD01000009
Bacteroidota
Saccharicrinis fermentans JCM 21142 [BAMD]
106910
106986
+
Met
CAT
[ENA]
¡û
>WENV183628006
OOGM01001465
[OOGM] marine metagenome; sea ice
1296
1222
-
Ile2
CAT
[ENA]
¡û
>WENV183747444
PPCM01002110
[PPCM] marine sediment metagenome; marine sediment
726
800
+
Ile2
CAT
[ENA]
¡û
>WENV170009519
APMI01000553
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3344
3270
-
Met
CAT
[ENA]
¡û
>WENV170024428
BCQL01059544
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
355
429
+
Met
CAT
[ENA]
¡û
>WENV170154027
CEOF01163054
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
77
3
-
Met
CAT
[ENA]
¡û
>WENV170361028
CETL01227350
[CETL] marine metagenome genome assembly TARA_112_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
439
365
-
Met
CAT
[ENA]
¡û
>WENV170643045
JFJP01048812
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
949
1023
+
Met
CAT
[ENA]
¡û
>WENV170903414
MDTD01201593
[MDTD] marine metagenome; seawater
4392
4316
-
Met
CAT
[ENA]
¡û
>WENV170991539
MWWA01229809
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
364
288
-
Met
CAT
[ENA]
¡û
>WENV170998994
MWWJ01197621
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
278
354
+
Met
CAT
[ENA]
¡û
>W1910548612
FZOQ01000007
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
11203
11129
-
Met
CAT
[ENA]
¡û
>W1910584204
JXSZ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
903887
903813
-
Met
CAT
[ENA]
¡û
>W1910693689
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
1306348
1306422
+
Met
CAT
[ENA]
¡û
>W1910744925
MIER01000002
Bacteroidota
Reichenbachiella sp. MSK19-1 [MIER]
1818253
1818327
+
Met
CAT
[ENA]
¡û
>W1911749350
QWGE01000001
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
547364
547290
-
Met
CAT
[ENA]
¡û
>SRA1003756
SRR002327.167196
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
57
131
+
Met
CAT
[SRA]
>SRA1004198
SRR002328.193790
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
141
215
+
Met
CAT
[SRA]
>W1810368057
PVZE01000007
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
207113
207187
+
Met
CAT
[ENA]
¡û
>C151056024
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
184
108
-
Met
CAT
[Ensembl]
¡û
>W2010303039
CABVLL010000045
Bacteroidota
Imperialibacter sp. EC-SDR9 [CABVLL]
135093
135169
+
Ile2
CAT
[ENA]
¡û
>W2010312352
CABWNM010000001
Bacteroidota
Marinoscillum sp. 108 [CABWNM]
1139630
1139704
+
Ile2
CAT
[ENA]
¡û
>W2010430373
FZOQ01000007
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
11203
11129
-
Ile2
CAT
[ENA]
¡û
>W2010732043
JACIJO010000001
Bacteroidota
Algoriphagus iocasae DSM 102044 [JACIJO]
1204821
1204747
-
Ile2
CAT
[ENA]
¡û
>W2010764016
JXSZ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
903887
903813
-
Ile2
CAT
[ENA]
¡û
>W2010827503
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
1306348
1306422
+
Ile2
CAT
[ENA]
¡û
>W2010878357
MIER01000002
Bacteroidota
Reichenbachiella sp. MSK19-1 [MIER]
1818253
1818327
+
Ile2
CAT
[ENA]
¡û
>W2011318595
QWGE01000001
Bacteroidota
Pontibacter sp. KIRAN [QWGE]
547364
547290
-
Ile2
CAT
[ENA]
¡û
>W2011637647
SMLV01000358
Bacteroidota
Fulvivirga lutimaris KCTC 42720 [SMLV]
5479
5405
-
Ile2
CAT
[ENA]
¡û
>W2011648417
SNWV01000016
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
177958
178032
+
Ile2
CAT
[ENA]
¡û
>W2011973326
VCHY01000021
Bacteroidota
Labilibacter sp. CG51 [VCHY]
46317
46243
-
Ile2
CAT
[ENA]
¡û
>W2012023215
VFRQ01000004
Bacteroidota
Pontibacter sp. HB172049 [VFRQ]
197939
198013
+
Ile2
CAT
[ENA]
¡û
>W2012208569
VYQF01000001
Bacteroidota
Chitinophagaceae bacterium BR5-29 [VYQF]
1860555
1860481
-
Ile2
CAT
[ENA]
¡û
>SRA1054551
SRR035099.160708
454 Sequencing (SRP001820)
76
152
+
Met
CAT
[SRA]
>W2110098479
CAJFDX010000057
Bacteroidota
Imperialibacter sp. 75 [CAJFDX]
135093
135169
+
Ile2
CAT
[ENA]
¡û
>W2110098770
CAJFED010000045
Bacteroidota
Imperialibacter sp. 89 [CAJFED]
188760
188684
-
Ile2
CAT
[ENA]
¡û
>W2110203077
JACEFJ010000017
Bacteroidota
Pararhodonellum marinum SW124 [JACEFJ]
33792
33866
+
Ile2
CAT
[ENA]
¡û
>W2110249382
JACRVF010000001
Bacteroidota
Pontibacter sp. SD6 [JACRVF]
1460286
1460212
-
Ile2
CAT
[ENA]
¡û
>W2110500686
JAFIDJ010000001
Bacteroidota
Algoriphagus lutimaris KCTC 22630 [JAFIDJ]
1628273
1628347
+
Ile2
CAT
[ENA]
¡û
>W2110500755
JAFIDK010000009
Bacteroidota
Algoriphagus aestuarii KCTC 42199 [JAFIDK]
37663
37589
-
Ile2
CAT
[ENA]
¡û
>W2110611463
JAHKPL010000023
Bacteroidota
Reichenbachiella agariperforans E3R18 [JAHKPL]
5783
5857
+
Ile2
CAT
[ENA]
¡û
>W2110641849
JAHSPG010000008
Bacteroidota
Parasegetibacter sp. MAH-26 [JAHSPG]
24000
23926
-
Ile2
CAT
[ENA]
¡û
>C211198441
CP065012
Bacteroidota
Chitinophagaceae bacterium [CP065012]
1308012
1307938
-
Ile2
CAT
-
¡û
>W2110709498
JAIXNE010000002
Bacteroidota
Fulvivirga sp. 1062 [JAIXNE]
483352
483427
+
Ile2
CAT
[ENA]
¡û
>W2110709509
JAIXNE010000003
Bacteroidota
Fulvivirga sp. 1062 [JAIXNE]
483352
483427
+
Ile2
CAT
[ENA]
¡û
>W2110709520
JAIXNE010000004
Bacteroidota
Fulvivirga sp. 1062 [JAIXNE]
483964
484039
+
Ile2
CAT
[ENA]
¡û
>C231183448
CP083757
Bacteroidota
Marinilongibacter aquaticus YYF0007 [CP083757]
89045
88971
-
Ile2
CAT
-
¡û
>C231220715
CP086063
Bacteroidota
Ferruginibacter lapsinanis KACC 15035 [CP086063]
1170569
1170495
-
Ile2
CAT
-
¡û
>C231502164
CP106679
Bacteroidota
Reichenbachiella sp. BKB1-1 [CP106679]
2870343
2870417
+
Ile2
CAT
-
¡û
>C231529106
CP110226
Bacteroidota
Algoriphagus sp. TR-M5 [CP110226]
452398
452324
-
Ile2
CAT
-
¡û
>C231565015
CP115160
Bacteroidota
Algoriphagus sp. TR-M9 [CP115160]
1698262
1698188
-
Ile2
CAT
-
¡û
>C241319767
CP134696
Bacteroidota
Pontibacter sp. G13 [CP134696]
7339099
7339173
+
Ile2
CAT
-
¡û
>C241326680
CP136051
Bacteroidota
Imperialibacter roseus P4T [CP136051]
349659
349583
-
Ile2
CAT
-
¡û
>C241350440
CP139421
Bacteroidota
Algoriphagus sp. NG3 [CP139421]
2486468
2486542
+
Ile2
CAT
-
¡û
>W1511346375
JRHC01000004
Bacteroidota
Draconibacterium sediminis JN14CK-3 [JRHC]
122814
122738
-
Met
CAT
[ENA]
¡û
>WENV046606
AACY022610885
Marine microbial communities from Global Ocean Sampling (GOS)
239
163
-
Met
CAT
[ENA]
>WENV050930
AACY022915974
Marine microbial communities from Global Ocean Sampling (GOS)
306
228
-
Met
CAT
[ENA]
>C161051313
CP013118
Bacteroidota
Salinivirga cyanobacteriivorans L21-Spi-D4 [CP013118]
2821394
2821318
-
Met
CAT
-
¡û
>W1610617451
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
903887
903813
-
Met
CAT
[ENA]
¡û
>W1610626605
LICM01000313
Bacteroidota
Sphingobacteriales bacterium BACL12 MAG-120802-bin5 [LICM]
2674
2750
+
Met
CAT
[ENA]
¡û
>WENV080053
AATO01002192
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1410
1486
+
Met
CAT
[ENA]
>W1710561073
FONW01000001
Bacteroidota
Sunxiuqinia elliptica [FONW]
139331
139255
-
Met
CAT
[ENA]
¡û
>W1710589289
FRAA01000005
Bacteroidota
Reichenbachiella agariperforans [FRAA]
271711
271787
+
Met
CAT
[ENA]
¡û
>W1710594213
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
1096949
1096875
-
Met
CAT
[ENA]
¡û
>W1710743038
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
903887
903813
-
Met
CAT
[ENA]
¡û
>W1710757732
LICM01000313
Bacteroidota
Sphingobacteriales bacterium BACL12 MAG-120802-bin5 [LICM]
2674
2750
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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