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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161524 (14 seq.)
>C024139
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
520260
520184
-
Met
CAT
[Ensembl]
¡û
>WENV170538912
CEWR01132223
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
300
373
+
Met
CAT
[ENA]
¢þ
>WENV170659920
JXWS01037435
[JXWS] soil metagenome; rice field; elevated CO2
722
646
-
Met
CAT
[ENA]
¢þ
>C181192128
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
551232
551157
-
Met
CAT
-
¡û
>C191072392
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
514361
514286
-
Met
CAT
-
¡û
>C191072436
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
560347
560272
-
Met
CAT
-
¡û
>C191072482
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
617111
617036
-
Met
CAT
-
¡û
>C191072526
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
575296
575221
-
Met
CAT
-
¡û
>C191072571
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
571524
571449
-
Met
CAT
-
¡û
>W1910870044
NCQX01000025
Rhodothermota
Salinibacter ruber SP273 [NCQX]
38425
38500
+
Met
CAT
[ENA]
¡û
>W1910870083
NCQY01000009
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
374715
374789
+
Met
CAT
[ENA]
¡û
>W1910870132
NCQZ01000020
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
106270
106196
-
Met
CAT
[ENA]
¡û
>W1910870189
NCRA01000020
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
3826
3752
-
Met
CAT
[ENA]
¡û
>C131018258
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
558897
558821
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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