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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161641 (88 seq.)
>W1710870140
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
454828
454904
+
Pro
CGG
[ENA]
¡û
>W1710870868
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
595638
595562
-
Pro
CGG
[ENA]
¡û
>W1710870938
LMKX01000007
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
771571
771647
+
Pro
CGG
[ENA]
¡û
>W1710871180
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
99512
99588
+
Pro
CGG
[ENA]
¡û
>W1710871233
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1679256
1679180
-
Pro
CGG
[ENA]
¡û
>W1710872294
LMLW01000007
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
471850
471774
-
Pro
CGG
[ENA]
¡û
>W1710876724
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
1936497
1936573
+
Pro
CGG
[ENA]
¡û
>W1710877201
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
1028520
1028596
+
Pro
CGG
[ENA]
¡û
>W1710878041
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
1394530
1394454
-
Pro
CGG
[ENA]
¡û
>C171030412
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
2806081
2806005
-
Pro
CGG
-
¡û
>WENV180016140
FSUD01000504
[FSUD] metagenome; soil
1121
1197
+
Pro
CGG
[ENA]
¡û
>WENV180026989
FTIV01029655
[FTIV] metagenome; soil
166
90
-
Pro
CGG
[ENA]
¡û
>WENV180028429
FTJA01365230
[FTJA] metagenome; soil
71
147
+
Pro
CGG
[ENA]
¡û
>WENV181379330
OFRD01000544
[OFRD] wastewater metagenome; Exp Tend CN 100WW
9321
9397
+
Pro
CGG
[ENA]
¡û
>WENV181384043
OFRH01009696
[OFRH] wastewater metagenome; Exp Tend NO 100WW
1193
1269
+
Pro
CGG
[ENA]
¡û
>WENV181385955
OFRL01000202
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
4927
4851
-
Pro
CGG
[ENA]
¡û
>WENV181399149
OFSE01012221
[OFSE] wastewater metagenome; Exp Tend VB 50WW
134
58
-
Pro
CGG
[ENA]
¡û
>WENV181400194
OFSF01002236
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1491
1415
-
Pro
CGG
[ENA]
¡û
>WENV170578069
FSSH01009873
[FSSH] freshwater metagenome; drinking water
1666
1590
-
Pro
CGG
[ENA]
¡û
>C191154771
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
2571560
2571484
-
Pro
CGG
-
¡û
>C191163750
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
2830325
2830401
+
Pro
CGG
-
¡û
>W1810475062
QAIS01000471
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
3576
3500
-
Pro
CGG
[ENA]
¡û
>W1810476708
QAOF01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
302786
302862
+
Pro
CGG
[ENA]
¡û
>W1810476778
QAOG01000005
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
54269
54345
+
Pro
CGG
[ENA]
¡û
>W1810486916
QAYE01000010
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
109679
109755
+
Pro
CGG
[ENA]
¡û
>SRA1014501
SRR023845.167373
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
123
47
-
Pro
CGG
[SRA]
>SRA1015057
SRR023845.442358
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
8
84
+
Pro
CGG
[SRA]
>SRA1015181
SRR023845.490221
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
137
61
-
Pro
CGG
[SRA]
>SRA1015459
SRR023846.67337
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
265
189
-
Pro
CGG
[SRA]
>SRA1016435
SRR023846.495398
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
5
-
Pro
CGG
[SRA]
>W2010302902
CABVLI010000039
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
377240
377316
+
Pro
CGG
[ENA]
¡û
>W2010369959
CAHJWJ010000001
Alphaproteobacteria
Sphingomonas bacterium [CAHJWJ]
225949
226025
+
Pro
CGG
[ENA]
¡û
>W2010370525
CAHJXA010000007
Alphaproteobacteria
Sphingomonas bacterium [CAHJXA]
10872
10796
-
Pro
CGG
[ENA]
¡û
>W2010559862
JAASQM010000002
Alphaproteobacteria
Sphingomonas naasensis DSM 100060 [JAASQM]
769394
769318
-
Pro
CGG
[ENA]
¡û
>W2010572134
JAAVJH010000005
Alphaproteobacteria
Sphingomonas sp. 36D10-4-7 [JAAVJH]
59492
59568
+
Pro
CGG
[ENA]
¡û
>W2010731643
JACIJF010000004
Alphaproteobacteria
Sphingomonas xinjiangensis DSM 26736 [JACIJF]
301508
301584
+
Pro
CGG
[ENA]
¡û
>W2011354890
RAPZ01000011
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
603693
603617
-
Pro
CGG
[ENA]
¡û
>W2011404467
RCWT01000010
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
443886
443810
-
Pro
CGG
[ENA]
¡û
>W2011404774
RCWY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
436100
436024
-
Pro
CGG
[ENA]
¡û
>W2011407536
RCZC01000001
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
238039
237963
-
Pro
CGG
[ENA]
¡û
>W2011495084
RWKS01000010
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
46374
46450
+
Pro
CGG
[ENA]
¡û
>W2011536249
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
375134
375058
-
Pro
CGG
[ENA]
¡û
>W2011538854
SCNH01000002
Alphaproteobacteria
Sphingomonas sp. 3F27F9 [SCNH]
353791
353715
-
Pro
CGG
[ENA]
¡û
>W2011560387
SGIS01000004
Alphaproteobacteria
Sphingomonas sp. 3-7 [SGIS]
69500
69424
-
Pro
CGG
[ENA]
¡û
>W2011578914
SGXR01000005
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
510773
510849
+
Pro
CGG
[ENA]
¡û
>W2011619358
SLUY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
604680
604604
-
Pro
CGG
[ENA]
¡û
>W2011623852
SLXW01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
450031
449955
-
Pro
CGG
[ENA]
¡û
>W2011624063
SLYA01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
644990
644914
-
Pro
CGG
[ENA]
¡û
>W2011624160
SLYD01000001
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
249308
249384
+
Pro
CGG
[ENA]
¡û
>W2011624269
SLYF01000003
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
239339
239415
+
Pro
CGG
[ENA]
¡û
>W2011685914
SRXU01000003
Alphaproteobacteria
Sphingomonas naasensis KIS18-15 [SRXU]
43815
43739
-
Pro
CGG
[ENA]
¡û
>W2110020664
BMDW01000004
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
200735
200659
-
Pro
CGG
[ENA]
¡û
>W2110051914
BNAQ01000001
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
1355273
1355197
-
Pro
CGG
[ENA]
¡û
>W2110243508
JACONT010000019
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
53999
54075
+
Pro
CGG
[ENA]
¡û
>W2110291021
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
86988
86912
-
Pro
CGG
[ENA]
¡û
>C211140871
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
1603655
1603731
+
Pro
CGG
-
¡û
>C211140951
CP061038
Alphaproteobacteria
Sphingomonas alpina DSM 22537 [CP061038]
922823
922747
-
Pro
CGG
-
¡û
>C231287071
CP090953
Alphaproteobacteria
Sphingomonas sp. S2-65 [CP090953]
1254653
1254729
+
Pro
CGG
-
¡û
>C231401143
CP098401
Alphaproteobacteria
Sphingomonas sp. RMG20 [CP098401]
1675831
1675755
-
Pro
CGG
-
¡û
>C231416139
CP099617
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29LAMAA1 [CP099617]
1235317
1235393
+
Pro
CGG
-
¡û
>C231416192
CP099619
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29MARTA1 [CP099619]
1004613
1004689
+
Pro
CGG
-
¡û
>C231416245
CP099621
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29THOMA1 [CP099621]
995531
995607
+
Pro
CGG
-
¡û
>C231463784
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
1172313
1172237
-
Pro
CGG
-
¡û
>C241006559
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
22462
22538
+
Pro
CGG
-
¡û
>C241006614
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
1056509
1056585
+
Pro
CGG
-
¡û
>C241131758
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
2492253
2492329
+
Pro
CGG
-
¡û
>W2130019083
JADBIA010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
295147
295223
+
Pro
CGG
[ENA]
¡û
>W1511361488
JSBN01000044
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
7115
7191
+
Pro
CGG
[ENA]
¡û
>W1511390127
JSXI01000001
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
285171
285247
+
Pro
CGG
[ENA]
¡û
>W121031757
AHHA01000021
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
309051
308975
-
Pro
CGG
[ENA]
¡û
>W121033250
AHIR01000043
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
39075
38999
-
Pro
CGG
[ENA]
¡û
>W121033267
AHIS01000027
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
24206
24282
+
Pro
CGG
[ENA]
¡û
>W121046798
AIDW01000011
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
18418
18342
-
Pro
CGG
[ENA]
¡û
>W1610071348
BCTZ01000021
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
22244
22168
-
Pro
CGG
[ENA]
¡û
>W1610076518
BCYU01000032
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
33485
33561
+
Pro
CGG
[ENA]
¡û
>W1610732486
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
454828
454904
+
Pro
CGG
[ENA]
¡û
>W1610733214
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
595638
595562
-
Pro
CGG
[ENA]
¡û
>W1610733284
LMKX01000007
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
771571
771647
+
Pro
CGG
[ENA]
¡û
>W1610733526
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
99512
99588
+
Pro
CGG
[ENA]
¡û
>W1610733579
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1679256
1679180
-
Pro
CGG
[ENA]
¡û
>W1610734640
LMLW01000007
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
471850
471774
-
Pro
CGG
[ENA]
¡û
>W1610739070
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
1936497
1936573
+
Pro
CGG
[ENA]
¡û
>W1610739547
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
1028520
1028596
+
Pro
CGG
[ENA]
¡û
>W1610740387
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
1394530
1394454
-
Pro
CGG
[ENA]
¡û
>W1710068713
BCTZ01000021
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
22244
22168
-
Pro
CGG
[ENA]
¡û
>W1710074207
BCYU01000032
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
33485
33561
+
Pro
CGG
[ENA]
¡û
>W1710509090
FMWX01000001
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
489383
489459
+
Pro
CGG
[ENA]
¡û
>W1710571503
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
743625
743549
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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