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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161642 (94 seq.)
>W1710869931
LMKC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf9 [LMKC]
319623
319699
+
Met
CAT
[ENA]
¡û
>W1710870007
LMKE01000001
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
491698
491774
+
Met
CAT
[ENA]
¡û
>W1710870147
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
682643
682567
-
Met
CAT
[ENA]
¡û
>W1710870254
LMKJ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf16 [LMKJ]
448574
448650
+
Met
CAT
[ENA]
¡û
>W1710870459
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
314502
314426
-
Met
CAT
[ENA]
¡û
>W1710870721
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
418261
418337
+
Met
CAT
[ENA]
¡û
>W1710870865
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
367374
367450
+
Met
CAT
[ENA]
¡û
>W1710870951
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
240330
240406
+
Met
CAT
[ENA]
¡û
>W1710870971
LMKY01000001
Alphaproteobacteria
Sphingomonas sp. Leaf29 [LMKY]
313846
313922
+
Met
CAT
[ENA]
¡û
>W1710871056
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
885417
885493
+
Met
CAT
[ENA]
¡û
>W1710871183
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
349865
349789
-
Met
CAT
[ENA]
¡û
>W1710871232
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1477749
1477825
+
Met
CAT
[ENA]
¡û
>W1710872282
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
675345
675421
+
Met
CAT
[ENA]
¡û
>W1710876763
LMPM01000003
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
153082
153006
-
Met
CAT
[ENA]
¡û
>W1710877197
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
637097
637173
+
Met
CAT
[ENA]
¡û
>WENV180105202
OAPD01014911
[OAPD] marine metagenome; 2010
98
174
+
Met
CAT
[ENA]
¡û
>WENV180107920
OAPH01019250
[OAPH] marine metagenome; seawater
589
513
-
Met
CAT
[ENA]
¡û
>WENV181185728
OELX01000634
[OELX] metagenome; 1998
277
201
-
Met
CAT
[ENA]
¡û
>WENV181377693
OFRA01025856
[OFRA] wastewater metagenome; Lake Maggiore Verbania
798
722
-
Met
CAT
[ENA]
¡û
>WENV181379405
OFRD01001201
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2005
2081
+
Met
CAT
[ENA]
¡û
>WENV181385899
OFRL01000064
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
35398
35474
+
Met
CAT
[ENA]
¡û
>WENV181399333
OFSE01023911
[OFSE] wastewater metagenome; Exp Tend VB 50WW
445
369
-
Met
CAT
[ENA]
¡û
>WENV181399997
OFSF01000640
[OFSF] wastewater metagenome; Exp Tend VB 100WW
3893
3817
-
Met
CAT
[ENA]
¡û
>WENV183682440
ORMF010438461
[ORMF] groundwater metagenome; groundwater
269
193
-
Met
CAT
[ENA]
¡û
>WENV170555790
CXWL01002157
[CXWL] groundwater metagenome; biofilm material
1581
1505
-
Met
CAT
[ENA]
¡û
>WENV170577556
FSSH01000179
[FSSH] freshwater metagenome; drinking water
174276
174200
-
Met
CAT
[ENA]
¡û
>WENV170708486
LNAP01087265
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
208
132
-
Met
CAT
[ENA]
¡û
>C191154740
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
807460
807536
+
Met
CAT
-
¡û
>C191163763
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
3260884
3260808
-
Met
CAT
-
¡û
>W141801013
JPDP01000020
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
18003
17927
-
Met
CAT
[ENA]
¡û
>W141805175
JPJC01000181
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
10335
10411
+
Met
CAT
[ENA]
¡û
>W1810463425
PZZN01000002
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
856974
857050
+
Met
CAT
[ENA]
¡û
>W1810475063
QAIS01000494
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
6671
6747
+
Met
CAT
[ENA]
¡û
>W1810476697
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
854599
854675
+
Met
CAT
[ENA]
¡û
>W1810476753
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
549938
550014
+
Met
CAT
[ENA]
¡û
>W1810486901
QAYE01000007
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
191607
191531
-
Met
CAT
[ENA]
¡û
>W1810577293
QEOD01000002
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
361447
361523
+
Met
CAT
[ENA]
¡û
>SRA1014621
SRR023845.230136
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
257
181
-
Met
CAT
[SRA]
>SRA1014669
SRR023845.254703
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
257
181
-
Met
CAT
[SRA]
>SRA1014801
SRR023845.319542
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
9
-
Met
CAT
[SRA]
>SRA1014810
SRR023845.322825
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
22
98
+
Met
CAT
[SRA]
>SRA1015101
SRR023845.461171
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
51
127
+
Met
CAT
[SRA]
>SRA1015280
SRR023845.537451
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
36
112
+
Met
CAT
[SRA]
>SRA1015667
SRR023846.151708
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
20
-
Met
CAT
[SRA]
>SRA1016505
SRR023846.535367
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
134
58
-
Met
CAT
[SRA]
>W2010302915
CABVLI010000043
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
192050
192126
+
Met
CAT
[ENA]
¡û
>W2010311817
CABWMY010000056
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
90561
90485
-
Met
CAT
[ENA]
¡û
>W2010370457
CAHJWW010000143
Alphaproteobacteria
Sphingomonas bacterium [CAHJWW]
5639
5715
+
Met
CAT
[ENA]
¡û
>W2010533972
JAAOYQ010000004
Alphaproteobacteria
Sphingomonas aerolata AS2.4 [JAAOYQ]
199026
199102
+
Met
CAT
[ENA]
¡û
>W2010720841
JACIAP010000001
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
589863
589939
+
Met
CAT
[ENA]
¡û
>W2011354887
RAPZ01000011
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
375433
375509
+
Met
CAT
[ENA]
¡û
>W2011404463
RCWT01000010
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
791328
791252
-
Met
CAT
[ENA]
¡û
>W2011404770
RCWY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
796942
796866
-
Met
CAT
[ENA]
¡û
>W2011407567
RCZC01000008
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
117230
117306
+
Met
CAT
[ENA]
¡û
>W2011495073
RWKS01000006
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
17051
17127
+
Met
CAT
[ENA]
¡û
>W2011536246
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
781447
781371
-
Met
CAT
[ENA]
¡û
>W2011538844
SCNH01000001
Alphaproteobacteria
Sphingomonas sp. 3F27F9 [SCNH]
78725
78801
+
Met
CAT
[ENA]
¡û
>W2011560413
SGIS01000035
Alphaproteobacteria
Sphingomonas sp. 3-7 [SGIS]
9230
9154
-
Met
CAT
[ENA]
¡û
>W2011578904
SGXR01000004
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
506309
506385
+
Met
CAT
[ENA]
¡û
>W2011619355
SLUY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
376414
376490
+
Met
CAT
[ENA]
¡û
>W2011623865
SLXW01000005
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
16368
16292
-
Met
CAT
[ENA]
¡û
>W2011624060
SLYA01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
367797
367873
+
Met
CAT
[ENA]
¡û
>W2011624193
SLYD01000005
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
247958
247882
-
Met
CAT
[ENA]
¡û
>W2011624273
SLYF01000004
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
252101
252025
-
Met
CAT
[ENA]
¡û
>W2110051941
BNAQ01000004
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
292710
292786
+
Met
CAT
[ENA]
¡û
>W2110243518
JACONT010000027
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
28758
28834
+
Met
CAT
[ENA]
¡û
>W2110290221
JACYTY010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
254179
254103
-
Met
CAT
[ENA]
¡û
>W2110290273
JACYTZ010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
1055250
1055174
-
Met
CAT
[ENA]
¡û
>W2110290852
JACYUP010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 13733 CFBP13733 [JACYUP]
640948
641024
+
Met
CAT
[ENA]
¡û
>W2110291018
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
714860
714784
-
Met
CAT
[ENA]
¡û
>W2110291603
JACYVG010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 13714 CFBP13714 [JACYVG]
456298
456374
+
Met
CAT
[ENA]
¡û
>W2110291815
JACYVM010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
140553
140629
+
Met
CAT
[ENA]
¡û
>W2110302301
JADBIA010000015
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
14542
14466
-
Met
CAT
[ENA]
¡û
>W2110554388
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
1341929
1341853
-
Met
CAT
[ENA]
¡û
>C231406199
CP098762
Alphaproteobacteria
Sphingomonas aerolata PDD-32b-11 [CP098762]
3037629
3037553
-
Met
CAT
-
¡û
>C241006561
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
594359
594435
+
Met
CAT
-
¡û
>C241006653
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
1280429
1280353
-
Met
CAT
-
¡û
>W1511357076
JRVI01000223
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
452
376
-
Met
CAT
[ENA]
¡û
>W1511361471
JSBN01000001
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
21787
21711
-
Met
CAT
[ENA]
¡û
>W121033223
AHIR01000006
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
251107
251031
-
Met
CAT
[ENA]
¡û
>W121033285
AHIS01000083
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
12920
12996
+
Met
CAT
[ENA]
¡û
>W1610732493
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
682643
682567
-
Met
CAT
[ENA]
¡û
>W1610732805
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
314502
314426
-
Met
CAT
[ENA]
¡û
>W1610733067
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
418261
418337
+
Met
CAT
[ENA]
¡û
>W1610733211
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
367374
367450
+
Met
CAT
[ENA]
¡û
>W1610733297
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
240330
240406
+
Met
CAT
[ENA]
¡û
>W1610733402
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
885417
885493
+
Met
CAT
[ENA]
¡û
>W1610733529
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
349865
349789
-
Met
CAT
[ENA]
¡û
>W1610733578
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1477749
1477825
+
Met
CAT
[ENA]
¡û
>W1610734628
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
675345
675421
+
Met
CAT
[ENA]
¡û
>W1610739109
LMPM01000003
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
153082
153006
-
Met
CAT
[ENA]
¡û
>W1610739543
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
637097
637173
+
Met
CAT
[ENA]
¡û
>WENV077333
AAFX01024130
Soil microbial communities from Minnesota Farm
201
123
-
Met
CAT
[ENA]
>W1710571500
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
516164
516240
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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