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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16238 (6 seq.)
>W1710909635
LNQR01000043
Nitrospirota
Candidatus Magnetominusculus xianensis HCH-1 [LNQR]
11357
11447
+
Ser
GCT
[ENA]
¡û
>WENV180250341
OBEQ010275133
[OBEQ] groundwater metagenome; groundwater
366
275
-
Ser
GCT
[ENA]
¡û
>WENV180582797
OCMR01084482
[OCMR] metagenome; diffuse fluid
150
241
+
Ser
GCT
[ENA]
¡û
>W2011643722
SNNQ01000767
Nitrospirota
Nitrospirales bacterium LBB_01 [SNNQ]
1261
1171
-
Ser
GCT
[ENA]
¡û
>C211077635
CP049016
Nitrospirota
Nitrospirales bacterium LBB_01 [CP049016]
912141
912231
+
Ser
GCT
-
¡û
>W1610767994
LNQR01000043
Nitrospirota
Candidatus Magnetominusculus xianensis HCH-1 [LNQR]
11357
11447
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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