This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162606 (60 seq.)
>W131052945
AMZQ01000002
Campylobacterota
Campylobacter showae CSUNSWCD [AMZQ]
49551
49626
+
Arg
CCT
[ENA]
¡û
>W131171375
ARGD01000036
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
147635
147559
-
Arg
CCT
[ENA]
¡û
>WENV180597217
OCPK01010460
[OCPK] human gut metagenome; ENVO:feces
493
568
+
Arg
CCT
[ENA]
¢þ
>WENV180729018
ODGU01157181
[ODGU] human metagenome; G_DNA_Supragingival plaque
9
85
+
Arg
CCT
[ENA]
¢þ
>WENV180733198
ODGY01051733
[ODGY] human metagenome; G_DNA_Supragingival plaque
367
291
-
Arg
CCT
[ENA]
¢þ
>WENV180750363
ODHS01001538
[ODHS] human metagenome; G_DNA_Supragingival plaque
3940
3864
-
Arg
CCT
[ENA]
¢þ
>WENV180768053
ODIG01002135
[ODIG] human metagenome; G_DNA_Tongue dorsum
3205
3281
+
Arg
CCT
[ENA]
¢þ
>WENV180769007
ODIG01027136
[ODIG] human metagenome; G_DNA_Tongue dorsum
353
278
-
Arg
CCT
[ENA]
¢þ
>WENV180779860
ODIN01020992
[ODIN] human metagenome; G_DNA_Throat
202
277
+
Arg
CCT
[ENA]
¢þ
>WENV180788769
ODIS01115334
[ODIS] human metagenome; G_DNA_Supragingival plaque
256
331
+
Arg
CCT
[ENA]
¢þ
>WENV180796375
ODJB01003966
[ODJB] human metagenome; G_DNA_Supragingival plaque
701
776
+
Arg
CCT
[ENA]
¢þ
>WENV180798177
ODJB01323318
[ODJB] human metagenome; G_DNA_Supragingival plaque
172
96
-
Arg
CCT
[ENA]
¢þ
>WENV180805167
ODJG01077608
[ODJG] human metagenome; G_DNA_Supragingival plaque
312
237
-
Arg
CCT
[ENA]
¢þ
>WENV180808992
ODJK01002660
[ODJK] human metagenome; G_DNA_Subgingival plaque
1181
1256
+
Arg
CCT
[ENA]
¢þ
>WENV180813854
ODJO01003211
[ODJO] human metagenome; G_DNA_Supragingival plaque
5890
5966
+
Arg
CCT
[ENA]
¢þ
>WENV180833449
ODKC01052756
[ODKC] human metagenome; G_DNA_Supragingival plaque
81
157
+
Arg
CCT
[ENA]
¢þ
>WENV180836305
ODKE01100198
[ODKE] human metagenome; G_DNA_Supragingival plaque
281
206
-
Arg
CCT
[ENA]
¢þ
>WENV180846068
ODKT01004619
[ODKT] human metagenome; G_DNA_Supragingival plaque
6338
6262
-
Arg
CCT
[ENA]
¢þ
>WENV180860313
ODLD01044089
[ODLD] human metagenome; G_DNA_Supragingival plaque
172
97
-
Arg
CCT
[ENA]
¢þ
>WENV180922359
ODTJ01003047
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1395
1471
+
Arg
CCT
[ENA]
¢þ
>WENV180928726
ODTM01197892
[ODTM] human metagenome; G_DNA_Supragingival plaque
100
25
-
Arg
CCT
[ENA]
¢þ
>WENV180930955
ODTP01000832
[ODTP] human metagenome; G_DNA_Tongue dorsum
5632
5557
-
Arg
CCT
[ENA]
¢þ
>WENV180937775
ODTX01000070
[ODTX] human metagenome; G_DNA_Supragingival plaque
107132
107207
+
Arg
CCT
[ENA]
¢þ
>WENV180948351
ODUG01000902
[ODUG] human metagenome; G_DNA_Tongue dorsum
17288
17363
+
Arg
CCT
[ENA]
¢þ
>WENV180972869
ODUW01000366
[ODUW] human metagenome; G_DNA_Supragingival plaque
6440
6364
-
Arg
CCT
[ENA]
¢þ
>WENV180976770
ODUY01246494
[ODUY] human metagenome; G_DNA_Supragingival plaque
204
128
-
Arg
CCT
[ENA]
¢þ
>WENV180983105
ODVF01003563
[ODVF] human metagenome; G_DNA_Supragingival plaque
26
102
+
Arg
CCT
[ENA]
¢þ
>WENV180985611
ODVJ01009751
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2827
2902
+
Arg
CCT
[ENA]
¢þ
>WENV180999618
ODVT01038975
[ODVT] human metagenome; G_DNA_Buccal mucosa
269
344
+
Arg
CCT
[ENA]
¢þ
>WENV181002495
ODVX01000488
[ODVX] human metagenome; G_DNA_Supragingival plaque
17153
17229
+
Arg
CCT
[ENA]
¢þ
>WENV181009082
ODWE01028119
[ODWE] human metagenome; G_DNA_Supragingival plaque
180
256
+
Arg
CCT
[ENA]
¢þ
>WENV181020017
ODWU01036173
[ODWU] human metagenome; G_DNA_Supragingival plaque
286
211
-
Arg
CCT
[ENA]
¢þ
>WENV181020540
ODWU01242156
[ODWU] human metagenome; G_DNA_Supragingival plaque
75
-1
-
Arg
CCT
[ENA]
¢þ
>WENV181038032
ODXQ01000236
[ODXQ] human metagenome; G_DNA_Tongue dorsum
21930
21855
-
Arg
CCT
[ENA]
¢þ
>WENV181050832
ODYD01070173
[ODYD] human metagenome; G_DNA_Supragingival plaque
508
432
-
Arg
CCT
[ENA]
¢þ
>WENV181060109
ODYM01042549
[ODYM] human metagenome; G_DNA_Tongue dorsum
276
201
-
Arg
CCT
[ENA]
¢þ
>WENV181067608
ODZI01029992
[ODZI] human metagenome; G_DNA_Supragingival plaque
176
252
+
Arg
CCT
[ENA]
¢þ
>WENV181076382
OEAP01004551
[OEAP] human metagenome; G_DNA_Supragingival plaque
6573
6497
-
Arg
CCT
[ENA]
¢þ
>WENV181076549
OEAP01007306
[OEAP] human metagenome; G_DNA_Supragingival plaque
4751
4676
-
Arg
CCT
[ENA]
¢þ
>WENV181084095
OEAV01062767
[OEAV] human metagenome; G_DNA_Supragingival plaque
266
342
+
Arg
CCT
[ENA]
¢þ
>WENV181091647
OEBC01065385
[OEBC] human metagenome; G_DNA_Supragingival plaque
262
186
-
Arg
CCT
[ENA]
¢þ
>WENV181098056
OECA01071605
[OECA] human metagenome; G_DNA_Tongue dorsum
225
300
+
Arg
CCT
[ENA]
¢þ
>WENV181107991
OEEI01048255
[OEEI] human metagenome; G_DNA_Supragingival plaque
562
638
+
Arg
CCT
[ENA]
¢þ
>WENV181122166
OEFL01107504
[OEFL] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
CCT
[ENA]
¢þ
>WENV181136395
OEGI01005182
[OEGI] human metagenome; G_DNA_Supragingival plaque
2555
2479
-
Arg
CCT
[ENA]
¢þ
>WENV181137768
OEGJ01023026
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1110
1034
-
Arg
CCT
[ENA]
¢þ
>WENV181179634
OEJT01010309
[OEJT] human metagenome; G_DNA_Supragingival plaque
2491
2416
-
Arg
CCT
[ENA]
¢þ
>WENV181181304
OEJU01019634
[OEJU] human metagenome; G_DNA_Supragingival plaque
172
248
+
Arg
CCT
[ENA]
¢þ
>WENV181811226
OGSY01000288
[OGSY] human gut metagenome; fecal sample 5 from infant 8
4630
4554
-
Arg
CCT
[ENA]
¢þ
>WENV181821381
OGUE01001233
[OGUE] human gut metagenome; fecal sample 1 from infant 5
604
528
-
Arg
CCT
[ENA]
¢þ
>W141463422
JFJK01000009
Campylobacterota
Campylobacter ureolyticus [JFJK]
84237
84161
-
Arg
CCT
[ENA]
¡û
>C181038867
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
1089676
1089601
-
Arg
CCT
-
¡û
>W09135465
ACVQ01000015
Campylobacterota
Campylobacter showae RM3277 [ACVQ]
6051
5976
-
Arg
CCT
[ENA]
¡û
>W1810056862
PDHH01000004
Campylobacterota
Campylobacter blaseri 17S00004-5 [PDHH]
155669
155593
-
Arg
CCT
[ENA]
¡û
>W1810056899
PDHI01000004
Campylobacterota
Campylobacter blaseri 17S00008-12 [PDHI]
155651
155575
-
Arg
CCT
[ENA]
¡û
>C151042191
CP009043
Campylobacterota
Campylobacter iguaniorum 1485E [CP009043]
1321836
1321760
-
Arg
CCT
[Ensembl]
¡û
>C151092534
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1261830
1261754
-
Arg
CCT
-
¡û
>C161030626
CP010995
Campylobacterota
Campylobacter iguaniorum 2463D [CP010995]
1450986
1450910
-
Arg
CCT
-
¡û
>C161089513
CP015577
Campylobacterota
Campylobacter iguaniorum RM11343 [CP015577]
1212811
1212735
-
Arg
CCT
-
¡û
>W121111422
ALJJ01000012
Campylobacterota
Campylobacter sp. FOBRC14 [ALJJ]
98012
98088
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK