This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162756 (18 seq.)
>W131237464
AUOM01000159
Alphaproteobacteria
alpha proteobacterium JGI 0001002-C12 [AUOM]
34573
34497
-
Met
CAT
[ENA]
¡û
>WENV180019698
FTCH01000230
[FTCH] metagenome; soil
229
305
+
Ile2
CAT
[ENA]
¡û
>WENV180040739
LLBZ010009998
[LLBZ] soil metagenome; soil from tomato rhizosphere
1094
1170
+
Ile2
CAT
[ENA]
¡û
>W141452326
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1761199
1761123
-
Met
CAT
[ENA]
¡û
>W1810594387
QFZL01000008
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
65100
65024
-
Met
CAT
[ENA]
¡û
>W1810858370
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
113784
113860
+
Met
CAT
[ENA]
¡û
>W1810917844
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
834160
834084
-
Met
CAT
[ENA]
¡û
>W2010724965
JACIDT010000010
Alphaproteobacteria
Sphingobium jiangsuense DSM 26189 [JACIDT]
170511
170435
-
Ile2
CAT
[ENA]
¡û
>W2011324220
QXDC01000002
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
1190903
1190827
-
Ile2
CAT
[ENA]
¡û
>W2011333059
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
151689
151613
-
Ile2
CAT
[ENA]
¡û
>W2012023834
VFSU01000024
Alphaproteobacteria
Sandaracinobacter sp. PAMC 28131 [VFSU]
260387
260463
+
Ile2
CAT
[ENA]
¡û
>C201257424
CP053015
Alphaproteobacteria
Sphingomonas sp. CSW-10 [CP053015]
2566417
2566493
+
Ile2
CAT
-
¡û
>C211137657
CP060717
Alphaproteobacteria
Sphingomonas rhizophila KACC 19189 [CP060717]
984372
984448
+
Ile2
CAT
-
¡û
>C241058996
CP041659
Alphaproteobacteria
Sphingomonas xanthus AE3 [CP041659]
100122
100198
+
Ile2
CAT
-
¡û
>C241138292
CP049870
Alphaproteobacteria
Sphingomonas sp. HDW15A [CP049870]
1205923
1205999
+
Ile2
CAT
-
¡û
>C241365877
CP141587
Alphaproteobacteria
Sphingomonas sp. LY29 [CP141587]
237375
237451
+
Ile2
CAT
-
¡û
>W1610071320
BCTZ01000003
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
140529
140453
-
Met
CAT
[ENA]
¡û
>W1710068685
BCTZ01000003
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
140529
140453
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK