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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16294 (55 seq.)
>W1710777869
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
742537
742627
+
Ser
GGA
[ENA]
¡û
>W1710777922
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
683641
683731
+
Ser
GGA
[ENA]
¡û
>W1710892042
LNDJ01000001
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
44708
44618
-
Ser
GGA
[ENA]
¡û
>W1710915857
LNUO01000171
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
16307
16397
+
Ser
GGA
[ENA]
¡û
>W1711227865
LXWA01000029
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
31566
31656
+
Ser
GGA
[ENA]
¡û
>W1711303124
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
1148224
1148314
+
Ser
GGA
[ENA]
¡û
>W1711682921
MRYA01000005
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
93184
93274
+
Ser
GGA
[ENA]
¡û
>W1711682961
MRYB01000008
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
2939
2849
-
Ser
GGA
[ENA]
¡û
>W1711682993
MRYC01000005
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
109924
110014
+
Ser
GGA
[ENA]
¡û
>C171019134
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
2219708
2219618
-
Ser
GGA
-
¡û
>C171131076
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
3125518
3125608
+
Ser
GGA
-
¡û
>C015818
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2517802
2517892
+
Ser
GGA
[Ensembl]
¡û
>WENV180101030
OAOU01000012
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
18051
18141
+
Ser
GGA
[ENA]
¢þ
>WENV180101061
OAOU01000087
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
654
564
-
Ser
GGA
[ENA]
¢þ
>w003193
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
851688
851778
+
Ser
GGA
[ENA]
¡û
>W141086156
AUSW01000006
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
100864
100954
+
Ser
GGA
[ENA]
¡û
>C08007215
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2517802
2517892
+
Ser
GGA
[Ensembl]
¡û
>W141233980
BAWG01000007
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
107096
107186
+
Ser
GGA
[ENA]
¡û
>W141234055
BAWI01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
72300
72210
-
Ser
GGA
[ENA]
¡û
>WENV182542111
OJAV01003365
[OJAV] seawater metagenome; Sea water
720
810
+
Ser
GGA
[ENA]
¢þ
>WENV182549765
OJBZ01000006
[OJBZ] seawater metagenome; Sea water
112069
112159
+
Ser
GGA
[ENA]
¢þ
>WENV182562325
OJDZ01000877
[OJDZ] seawater metagenome; Sea water
2147
2057
-
Ser
GGA
[ENA]
¢þ
>WENV170014683
AYSL01004992
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
4647
4737
+
Ser
GGA
[ENA]
¢þ
>WENV170563431
CZCB01017781
[CZCB] anaerobic digester metagenome; anaerobic digester
1475
1385
-
Ser
GGA
[ENA]
¢þ
>WENV170790850
MDSV01072719
[MDSV] marine metagenome; seawater
4627
4537
-
Ser
GGA
[ENA]
¢þ
>C191163873
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
95209
95119
-
Ser
GGA
-
¡û
>W1910377593
FUKN01000012
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
116607
116517
-
Ser
GGA
[ENA]
¡û
>W1910891661
NEXR01000011
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
98606
98696
+
Ser
GGA
[ENA]
¡û
>W1910891779
NEXU01000072
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
271
181
-
Ser
GGA
[ENA]
¡û
>W1911203673
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
116631
116541
-
Ser
GGA
[ENA]
¡û
>W1911534854
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
946931
947021
+
Ser
GGA
[ENA]
¡û
>W1810155476
PJAS01000073
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
106378
106468
+
Ser
GGA
[ENA]
¡û
>W1810155518
PJAT01000112
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
110219
110309
+
Ser
GGA
[ENA]
¡û
>W1810156176
PJBD01000019
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
43717
43807
+
Ser
GGA
[ENA]
¡û
>W1810156350
PJBF01000061
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
43717
43807
+
Ser
GGA
[ENA]
¡û
>W1810156436
PJBH01000066
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
64090
64180
+
Ser
GGA
[ENA]
¡û
>W1810157248
PJBU01000078
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
49348
49438
+
Ser
GGA
[ENA]
¡û
>W1810157391
PJBX01000172
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
66981
66891
-
Ser
GGA
[ENA]
¡û
>W1810596414
QGGM01000013
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
29551
29641
+
Ser
GGA
[ENA]
¡û
>W1810671440
QJSU01000007
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
142450
142540
+
Ser
GGA
[ENA]
¡û
>W1810692686
QLKS01000006
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
113139
113229
+
Ser
GGA
[ENA]
¡û
>C161042791
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
3248838
3248928
+
Ser
GGA
[Ensembl]
¡û
>C161079269
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3150228
3150318
+
Ser
GGA
[Ensembl]
¡û
>W121043501
AHVZ01000011
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
227433
227523
+
Ser
GGA
[ENA]
¡û
>W1610112380
CZJV02000044
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
111238
111328
+
Ser
GGA
[ENA]
¡û
>C131017390
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2915805
2915895
+
Ser
GGA
[Ensembl]
¡û
>W1610632749
LIQB01000008
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
107700
107790
+
Ser
GGA
[ENA]
¡û
>W1610642055
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
742537
742627
+
Ser
GGA
[ENA]
¡û
>W1610642108
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
683641
683731
+
Ser
GGA
[ENA]
¡û
>W1610752308
LNDJ01000001
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
44708
44618
-
Ser
GGA
[ENA]
¡û
>W1610774096
LNUO01000171
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
16307
16397
+
Ser
GGA
[ENA]
¡û
>W1611011829
LXWA01000029
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
31566
31656
+
Ser
GGA
[ENA]
¡û
>W1710115084
CZJV02000044
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
111238
111328
+
Ser
GGA
[ENA]
¡û
>W1710513814
FNAL01000010
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
62509
62419
-
Ser
GGA
[ENA]
¡û
>W1710767181
LIQB01000008
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
107700
107790
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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