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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163952 (34 seq.)
>W1711414275
MGZH01000033
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
8634
8558
-
Asp
GTC
[ENA]
¡û
>W1711414298
MGZI01000007
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_48_7 [MGZI]
5162
5086
-
Asp
GTC
[ENA]
¡û
>W1711414325
MGZJ01000014
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
3337
3413
+
Asp
GTC
[ENA]
¡û
>W1711414375
MGZK01000048
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
56994
57070
+
Asp
GTC
[ENA]
¡û
>W1711414382
MGZK01000097
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
8199
8123
-
Asp
GTC
[ENA]
¡û
>W1711414434
MGZL01000121
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
30659
30735
+
Asp
GTC
[ENA]
¡û
>W1711414436
MGZL01000121
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
30916
30992
+
Asp
GTC
[ENA]
¡û
>W1711414470
MGZM01000224
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
5382
5306
-
Asp
GTC
[ENA]
¡û
>W131228707
AUGE01000001
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
504171
504095
-
Asp
GTC
[ENA]
¡û
>W131228709
AUGE01000001
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
503906
503830
-
Asp
GTC
[ENA]
¡û
>C017504
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1233415
1233339
-
Asp
GTC
[Ensembl]
¡û
>C017506
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1233231
1233155
-
Asp
GTC
[Ensembl]
¡û
>w024820
AAZA01000061
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
1376
1454
+
Asp
GTC
[ENA]
¡û
>w024818
AAZA01000061
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
1104
1182
+
Asp
GTC
[ENA]
¡û
>WENV180308705
OBJR01131618
[OBJR] soil metagenome; soil
187
111
-
Asp
GTC
[ENA]
¢þ
>W08010637
ABRF01000005
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
30348
30275
-
Asp
GTC
[ENA]
¡û
>W08010639
ABRF01000005
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
30083
30010
-
Asp
GTC
[ENA]
¡û
>C08005196
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1474068
1474144
+
Asp
GTC
[Ensembl]
¡û
>C08005198
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1474340
1474416
+
Asp
GTC
[Ensembl]
¡û
>WENV183703732
PDVJ01039371
[PDVJ] alkali sediment metagenome; glacial lake sediment
546
622
+
Asp
GTC
[ENA]
¢þ
>WENV183703734
PDVJ01039371
[PDVJ] alkali sediment metagenome; glacial lake sediment
761
837
+
Asp
GTC
[ENA]
¢þ
>WENV170003890
AGTN01492261
[AGTN] bioreactor metagenome; poplar biomass
2
78
+
Asp
GTC
[ENA]
¢þ
>WENV170634948
JAHE01141941
[JAHE] sediment metagenome; lake sediment
50
126
+
Asp
GTC
[ENA]
¢þ
>W09103516
AAJH01000003
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
152009
151933
-
Asp
GTC
[ENA]
¡û
>W09103518
AAJH01000003
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
151825
151749
-
Asp
GTC
[ENA]
¡û
>W09133615
ACPJ01000008
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
33332
33256
-
Asp
GTC
[ENA]
¡û
>W09133617
ACPJ01000008
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
33072
32996
-
Asp
GTC
[ENA]
¡û
>C09106425
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3494765
3494689
-
Asp
GTC
[Ensembl]
¡û
>C09106427
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3494500
3494424
-
Asp
GTC
[Ensembl]
¡û
>SRA1013969
SRR023821.13921
Pru Toh Daeng peat swamp (SRP001114)
41
117
+
Asp
GTC
[SRA]
>C11109568
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
1379938
1380014
+
Asp
GTC
[Ensembl]
¡û
>C11109570
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
1380198
1380274
+
Asp
GTC
[Ensembl]
¡û
>W1710087156
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
383837
383913
+
Asp
GTC
[ENA]
¡û
>W1710087158
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
384101
384177
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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