This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164551 (32 seq.)
>A171000194
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
323818
323895
+
Ala
GGC
-
¡û
>A171002163
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
655238
655315
+
Ala
TGC
-
¡û
>A171002185
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1221937
1221860
-
Ala
GGC
-
¡û
>A171002679
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1271789
1271712
-
Ala
GGC
-
¡û
>A171003258
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
283063
283140
+
Ala
TGC
-
¡û
>A171003268
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1082616
1082693
+
Ala
GGC
-
¡û
>A171003339
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
315702
315625
-
Ala
GGC
-
¡û
>A171003350
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
722968
723045
+
Ala
GGC
-
¡û
>A171003367
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1357676
1357599
-
Ala
TGC
-
¡û
>A171004206
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
410013
410090
+
Ala
GGC
-
¡û
>A171004267
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
209754
209831
+
Ala
GGC
-
¡û
>A171004453
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1250544
1250621
+
Ala
GGC
-
¡û
>A171005860
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
93359
93436
+
Ala
TGC
-
¡û
>A171005898
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
926971
926894
-
Ala
GGC
-
¡û
>A171007117
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
424639
424562
-
Ala
GGC
-
¡û
>A171007493
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
309467
309544
+
Ala
TGC
-
¡û
>A171007528
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
636011
635934
-
Ala
GGC
-
¡û
>WENV180634692
OCRB01072349
[OCRB] metagenome; diffuse fluid
210
133
-
Ala
GGC
[ENA]
¢þ
>At1780
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
206606
206683
+
Ala
TGC
[Ensembl]
¡û
>At1800
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1315533
1315610
+
Ala
GGC
[Ensembl]
¡û
>At1825
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
138486
138563
+
Ala
TGC
[Ensembl]
¡û
>At1872
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
192530
192607
+
Ala
TGC
[Ensembl]
¡û
>At1895
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
613172
613095
-
Ala
GGC
[Ensembl]
¡û
>At1919
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
424153
424230
+
Ala
GGC
[Ensembl]
¡û
>W1910229972
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
300929
301006
+
Ala
GGC
[ENA]
¡û
>W1610000890
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
179703
179780
+
Ala
GGC
[ENA]
¡û
>W1610005285
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
121874
121797
-
Ala
GGC
[ENA]
¡û
>W1610005300
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
75697
75620
-
Ala
TGC
[ENA]
¡û
>W1610046817
BBCU01000002
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
85566
85643
+
Ala
GGC
[ENA]
¡û
>W1610638221
LIXN01000006
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
33756
33833
+
Ala
GGC
[ENA]
¡û
>ENV001439
AY878144
Environmental sample from ENV division of INSDC
61
140
+
Ala
TGC
[ENA]
>ENV001440
AY878145
Environmental sample from ENV division of INSDC
61
140
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK