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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16482 (47 seq.)
>W1710860527
LMCY01000008
Betaproteobacteria
Massilia sp. Root335 [LMCY]
285293
285383
+
Ser
GGA
[ENA]
¡û
>W1710860670
LMDB01000022
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
510238
510328
+
Ser
GGA
[ENA]
¡û
>W1710867211
LMIC01000002
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179457
179367
-
Ser
GGA
[ENA]
¡û
>C171130522
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1431178
1431088
-
Ser
GGA
-
¡û
>WENV180022303
FTFY01000283
[FTFY] metagenome; soil
559
649
+
Ser
GGA
[ENA]
¢þ
>WENV180026716
FTIU01038733
[FTIU] metagenome; soil
891
981
+
Ser
GGA
[ENA]
¢þ
>WENV180029896
FTJL01015597
[FTJL] metagenome; soil
426
516
+
Ser
GGA
[ENA]
¢þ
>WENV180271015
OBEQ012228349
[OBEQ] groundwater metagenome; groundwater
922
1012
+
Ser
GGA
[ENA]
¢þ
>W141075130
ASZV01000022
Betaproteobacteria
Ralstonia sp. AU12-08 [ASZV]
168961
169051
+
Ser
GGA
[ENA]
¡û
>WENV170558852
CXWL01095715
[CXWL] groundwater metagenome; biofilm material
9108
9018
-
Ser
GGA
[ENA]
¢þ
>WENV170558996
CXWL01105225
[CXWL] groundwater metagenome; biofilm material
4896
4986
+
Ser
GGA
[ENA]
¢þ
>WENV170559244
CXWL01115731
[CXWL] groundwater metagenome; biofilm material
2579
2666
+
Ser
GGA
[ENA]
¢þ
>WENV170586574
FUFK010428832
[FUFK] metagenome; unknown
842
932
+
Ser
GGA
[ENA]
¢þ
>WENV170593585
FUFK010919522
[FUFK] metagenome; unknown
207
117
-
Ser
GGA
[ENA]
¢þ
>WENV170594044
FUFK011149158
[FUFK] metagenome; unknown
272
182
-
Ser
GGA
[ENA]
¢þ
>C181102668
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
2085836
2085926
+
Ser
GGA
-
¡û
>C181187771
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
3168215
3168125
-
Ser
GGA
-
¡û
>W1910128505
BHVX01000015
Betaproteobacteria
Ralstonia sp. SET104 [BHVX]
55986
56076
+
Ser
GGA
[ENA]
¡û
>W1911572399
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1008324
1008234
-
Ser
GGA
[ENA]
¡û
>W1911802844
QYUP01000061
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
5550
5460
-
Ser
GGA
[ENA]
¡û
>W1810194507
PKPB01000001
Betaproteobacteria
Ralstonia insidiosa WCHRI065437 [PKPB]
1135155
1135065
-
Ser
GGA
[ENA]
¡û
>W1810194577
PKPC01000019
Betaproteobacteria
Ralstonia insidiosa WCHRI065162 [PKPC]
116351
116441
+
Ser
GGA
[ENA]
¡û
>W1810887533
QUQN01000004
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
106684
106594
-
Ser
GGA
[ENA]
¡û
>C11105084
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3909016
3908926
-
Ser
GGA
[Ensembl]
¡û
>W1511392365
JSZO01000020
Betaproteobacteria
Ralstonia sp. A12 [JSZO]
34777
34867
+
Ser
GGA
[ENA]
¡û
>W1511449681
JVBI01000182
Betaproteobacteria
Ralstonia solanacearum 58_RSOL [JVBI]
9873
9963
+
Ser
GGA
[ENA]
¡û
>W1511693145
LFZM01000006
Betaproteobacteria
Ralstonia sp. MD27 [LFZM]
384017
384107
+
Ser
GGA
[ENA]
¡û
>C161043136
CP012605
Betaproteobacteria
Ralstonia insidiosa FC1138 [CP012605, CP012606]
1235751
1235661
-
Ser
GGA
-
¡û
>C161053605
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4376245
4376155
-
Ser
GGA
[Ensembl]
¡û
>C161053704
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4266836
4266746
-
Ser
GGA
[Ensembl]
¡û
>C161053756
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3443223
3443133
-
Ser
GGA
[Ensembl]
¡û
>C161053804
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4343178
4343088
-
Ser
GGA
[Ensembl]
¡û
>C161093303
CP016022
Betaproteobacteria
Ralstonia insidiosa ATCC 49129 [CP016022, CP016023]
1199869
1199779
-
Ser
GGA
[Ensembl]
¡û
>W1610053789
BBQS01000166
Betaproteobacteria
Ralstonia sp. NT80 [BBQS]
13715
13805
+
Ser
GGA
[ENA]
¡û
>W1610093123
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1610163417
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1610722873
LMCY01000008
Betaproteobacteria
Massilia sp. Root335 [LMCY]
285293
285383
+
Ser
GGA
[ENA]
¡û
>W1610723016
LMDB01000022
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
510238
510328
+
Ser
GGA
[ENA]
¡û
>W1610729557
LMIC01000002
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179457
179367
-
Ser
GGA
[ENA]
¡û
>W1710050167
BBQS01000166
Betaproteobacteria
Ralstonia sp. NT80 [BBQS]
13715
13805
+
Ser
GGA
[ENA]
¡û
>W1710050794
BBSM01000055
Betaproteobacteria
Burkholderia sp. E7m48 [BBSM]
38827
38917
+
Ser
GGA
[ENA]
¡û
>W1710067816
BCTG01000024
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
2509
2419
-
Ser
GGA
[ENA]
¡û
>W1710096331
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1710165084
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1710556450
FOKF01000014
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
33623
33533
-
Ser
GGA
[ENA]
¡û
>W1710557545
FOLC01000031
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
37017
36927
-
Ser
GGA
[ENA]
¡û
>W1710564236
FOQI01000017
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
111999
111909
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK