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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164907 (10 seq.)
>WENV180106976
OAPF01018547
[OAPF] marine metagenome; ENVO:00002010
247
171
-
Arg
CCT
[ENA]
¡û
>WENV180358836
OBNQ01027820
[OBNQ] marine metagenome; ENVO 00002150
341
417
+
Arg
CCT
[ENA]
¡û
>WENV170117873
CENJ01034652
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
507
431
-
Arg
CCT
[ENA]
¡û
>WENV170359013
CETK01157366
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1008
1084
+
Arg
CCT
[ENA]
¡û
>WENV170865610
MDTB01121660
[MDTB] marine metagenome; seawater
18193
18117
-
Arg
CCT
[ENA]
¡û
>WENV170891151
MDTD01019965
[MDTD] marine metagenome; seawater
2274
2350
+
Arg
CCT
[ENA]
¡û
>WENV170926146
MDTG01095966
[MDTG] marine metagenome; seawater
6734
6810
+
Arg
CCT
[ENA]
¡û
>WENV030853
AACY021316945
Marine microbial communities from Global Ocean Sampling (GOS)
337
415
+
Arg
CCT
[ENA]
>W121006714
AFXB01000010
Alphaproteobacteria
SAR116 cluster alpha proteobacterium HIMB100 [AFXB]
1055348
1055424
+
Arg
CCT
[ENA]
¡û
>WENV063328
AACY023500315
Marine microbial communities from Global Ocean Sampling (GOS)
378
456
+
Arg
CCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK