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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16575 (12 seq.)
>W1711136045
LUZT01000004
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
87046
87136
+
Ser
GGA
[ENA]
¡û
>W1711626070
MPJE01000015
Chlorobiota
Chlorobium sp. KB01 [MPJE]
131
41
-
Ser
GGA
[ENA]
¡û
>C005322
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
570612
570522
-
Ser
GGA
[Ensembl]
¡û
>C007034
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
1208892
1208802
-
Ser
GGA
[Ensembl]
¡û
>w018034
AASE01000009
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
2620
2528
-
Ser
GGA
[ENA]
¡û
>w007198
AAIK01000014
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
39105
39018
-
Ser
GGA
[ENA]
¡û
>w006952
AAIC01000017
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
11441
11349
-
Ser
GGA
[ENA]
¡û
>C08003637
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
1139107
1139195
+
Ser
GGA
[Ensembl]
¡û
>C08003824
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1405365
1405275
-
Ser
GGA
[Ensembl]
¡û
>C08007720
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1890707
1890620
-
Ser
GGA
[Ensembl]
¡û
>SRA1039796
SRR035090.572103
454 Sequencing (SRP001811)
209
297
+
Ser
GGA
[SRA]
>W1610947165
LUZT01000004
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
87046
87136
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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