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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165995 (40 seq.)
>W1710893740
LNFA01000285
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
13604
13528
-
Asp
GTC
[ENA]
¡û
>W131184839
ARTG01000005
Alphaproteobacteria
Hyphomicrobium zavarzinii ATCC 27496 [ARTG]
62686
62762
+
Asp
GTC
[ENA]
¡û
>WENV181167902
OEIU01101784
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
74
150
+
Asp
GTC
[ENA]
¡û
>WENV181169913
OEIV010014510
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1067
1143
+
Asp
GTC
[ENA]
¡û
>WENV181188329
OEOE01087264
[OEOE] activated sludge metagenome; Activated Sludge
218
294
+
Asp
GTC
[ENA]
¡û
>WENV181222607
OFDC01000025
[OFDC] hot springs metagenome; Water
106318
106242
-
Asp
GTC
[ENA]
¡û
>WENV181226712
OFDN01000015
[OFDN] hot springs metagenome; Water
204166
204090
-
Asp
GTC
[ENA]
¡û
>W141278401
JAFM01000001
Alphaproteobacteria
Hyphomicrobium sp. 802 [JAFM]
3278048
3277972
-
Asp
GTC
[ENA]
¡û
>WENV183724144
PJQE01000364
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
4614
4538
-
Asp
GTC
[ENA]
¡û
>WENV183725775
PJQF01015265
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
304
380
+
Asp
GTC
[ENA]
¡û
>WENV183746482
POYD01028887
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
1
77
+
Asp
GTC
[ENA]
¡û
>WENV170000014
AERA01000858
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
363
287
-
Asp
GTC
[ENA]
¡û
>WENV170446269
CEUY01111239
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
139
215
+
Asp
GTC
[ENA]
¡û
>WENV170465736
CEVD01550513
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2174
2098
-
Asp
GTC
[ENA]
¡û
>WENV170553027
CXWK01005847
[CXWK] wastewater metagenome; activated sludge
44554
44478
-
Asp
GTC
[ENA]
¡û
>WENV170577725
FSSH01000631
[FSSH] freshwater metagenome; drinking water
4735
4659
-
Asp
GTC
[ENA]
¡û
>WENV170648346
JRHI01000188
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
18539
18615
+
Asp
GTC
[ENA]
¡û
>WENV170649552
JRYC01019889
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
1122
1046
-
Asp
GTC
[ENA]
¡û
>WENV170650136
JRYD01014095
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
184
108
-
Asp
GTC
[ENA]
¡û
>WENV170652224
JRYH01000123
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
57052
57128
+
Asp
GTC
[ENA]
¡û
>WENV170652267
JRYH01000430
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1223
1147
-
Asp
GTC
[ENA]
¡û
>WENV170653166
JRYI01009083
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1284
1208
-
Asp
GTC
[ENA]
¡û
>WENV170709252
LNFM01000216
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
181490
181414
-
Asp
GTC
[ENA]
¡û
>WENV170713412
LNFM01030539
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
14
-
Asp
GTC
[ENA]
¡û
>W09135215
ACVL01000009
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
61624
61700
+
Asp
GTC
[ENA]
¡û
>W1910236458
FPHO01000002
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
299940
300016
+
Asp
GTC
[ENA]
¡û
>W2010385686
FPHO01000002
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
299940
300016
+
Asp
GTC
[ENA]
¡û
>SRA1041072
SRR035091.192001
454 Sequencing (SRP001812)
242
166
-
Asp
GTC
[SRA]
>W2011255657
QHJE01000001
Alphaproteobacteria
Hyphomicrobium methylovorum Bras1 [QHJE]
547278
547202
-
Asp
GTC
[ENA]
¡û
>C211198273
CP065008
Alphaproteobacteria
Alphaproteobacteria bacterium [CP065008]
1645939
1646015
+
Asp
GTC
-
¡û
>W1510072636
CDHO01000002
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
365777
365853
+
Asp
GTC
[ENA]
¡û
>C231568820
CP115706
Alphaproteobacteria
Hyphomicrobium sp. DMF-1 [CP115706]
2335872
2335948
+
Asp
GTC
-
¡û
>C10107556
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
1994199
1994123
-
Asp
GTC
[Ensembl]
¡û
>WENV11100372
AERA01000858
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
363
287
-
Asp
GTC
[ENA]
¡û
>C11111395
FQ859181
Alphaproteobacteria
Hyphomicrobium sp. MC1 [FQ859181]
2776078
2776002
-
Asp
GTC
[Ensembl]
¡û
>W11181111
AGIS01000003
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
103903
103827
-
Asp
GTC
[ENA]
¡û
>WENV069399
AACY023764995
Marine microbial communities from Global Ocean Sampling (GOS)
688
766
+
Asp
GTC
[ENA]
>C131015801
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
1217063
1217139
+
Asp
GTC
[Ensembl]
¡û
>W1610754006
LNFA01000285
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
13604
13528
-
Asp
GTC
[ENA]
¡û
>W1710579353
FPCH01000002
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
715844
715768
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK