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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166414 (96 seq.)
>W1711078236
LSMR01000170
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
16407
16483
+
Met
CAT
[ENA]
¡û
>W1711089479
LSZT01000008
Gammaproteobacteria
Pseudomonas aeruginosa [LSZT]
80691
80767
+
Met
CAT
[ENA]
¡û
>W1711089561
LSZU01000101
Gammaproteobacteria
Pseudomonas aeruginosa [LSZU]
80691
80767
+
Met
CAT
[ENA]
¡û
>W1711089618
LSZV01000073
Gammaproteobacteria
Pseudomonas aeruginosa [LSZV]
80691
80767
+
Met
CAT
[ENA]
¡û
>W1711128970
LUTR01000006
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
62640
62564
-
Met
CAT
[ENA]
¡û
>W1711129038
LUTS01000004
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
175594
175518
-
Met
CAT
[ENA]
¡û
>W1711179211
LWHM01000016
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-49 [LWHM]
224520
224596
+
Met
CAT
[ENA]
¡û
>W1711179254
LWHN01000018
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-111 [LWHN]
10340
10264
-
Met
CAT
[ENA]
¡û
>W1711257839
LYTY01000009
Gammaproteobacteria
Pseudomonas aeruginosa [LYTY]
42420
42344
-
Met
CAT
[ENA]
¡û
>WENV010770
AACY020291446
Marine microbial communities from Global Ocean Sampling (GOS)
721
645
-
Met
CAT
[ENA]
>W1711618754
MPBO01000001
Gammaproteobacteria
Pseudomonas aeruginosa [MPBO]
668717
668641
-
Met
CAT
[ENA]
¡û
>W1712035321
NFGS01000007
Gammaproteobacteria
Pseudomonas aeruginosa [NFGS]
153055
152979
-
Met
CAT
[ENA]
¡û
>W1712035540
NFGW01000005
Gammaproteobacteria
Pseudomonas aeruginosa [NFGW]
204204
204128
-
Met
CAT
[ENA]
¡û
>W1712035612
NFGX01000005
Gammaproteobacteria
Pseudomonas aeruginosa [NFGX]
300345
300269
-
Met
CAT
[ENA]
¡û
>W1712101060
NIIV01000001
Gammaproteobacteria
Pseudomonas aeruginosa [NIIV]
299851
299775
-
Met
CAT
[ENA]
¡û
>W1712101123
NIIW01000003
Gammaproteobacteria
Pseudomonas aeruginosa [NIIW]
77288
77364
+
Met
CAT
[ENA]
¡û
>W1712101257
NIIY01000013
Gammaproteobacteria
Pseudomonas aeruginosa [NIIY]
67658
67582
-
Met
CAT
[ENA]
¡û
>W1712101287
NIIZ01000001
Gammaproteobacteria
Pseudomonas aeruginosa [NIIZ]
77288
77364
+
Met
CAT
[ENA]
¡û
>W1712101351
NIJA01000002
Gammaproteobacteria
Pseudomonas aeruginosa [NIJA]
300064
299988
-
Met
CAT
[ENA]
¡û
>W1712101441
NIJB01000013
Gammaproteobacteria
Pseudomonas aeruginosa [NIJB]
67658
67582
-
Met
CAT
[ENA]
¡û
>W1712101574
NIJE01000002
Gammaproteobacteria
Pseudomonas aeruginosa [NIJE]
300064
299988
-
Met
CAT
[ENA]
¡û
>C022739
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1153201
1153125
-
Met
CAT
[Ensembl]
¡û
>w016590
AAQH01000004
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
29322
29249
-
Met
CAT
[ENA]
¡û
>WENV180359190
OBNR01014171
[OBNR] marine metagenome; Seawater_00002010_00002149
538
462
-
Ile2
CAT
[ENA]
¡û
>WENV180376571
OBOM01030157
[OBOM] marine metagenome; Seawater
156
80
-
Ile2
CAT
[ENA]
¡û
>W141055179
AONB01000005
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
191159
191083
-
Met
CAT
[ENA]
¡û
>W141160931
AXPS01000001
Gammaproteobacteria
Pseudomonas aeruginosa BL08 [AXPS]
669006
668930
-
Met
CAT
[ENA]
¡û
>W141163328
AXRE01000023
Gammaproteobacteria
Pseudomonas aeruginosa 6077 [AXRE]
612137
612061
-
Met
CAT
[ENA]
¡û
>WENV182541182
OJAS01001309
[OJAS] seawater metagenome; Sea water
262
186
-
Ile2
CAT
[ENA]
¡û
>WENV182551144
OJCB01033513
[OJCB] seawater metagenome; Sea water
205
129
-
Ile2
CAT
[ENA]
¡û
>WENV182558716
OJDN01001296
[OJDN] seawater metagenome; Sea water
4782
4858
+
Ile2
CAT
[ENA]
¡û
>WENV182572714
OJFM01005909
[OJFM] seawater metagenome; Sea water
923
847
-
Ile2
CAT
[ENA]
¡û
>WENV182585221
OJHH01003756
[OJHH] seawater metagenome; Sea water
1364
1440
+
Ile2
CAT
[ENA]
¡û
>WENV182588887
OJHY01001178
[OJHY] seawater metagenome; Sea water
3814
3738
-
Ile2
CAT
[ENA]
¡û
>WENV182591329
OJIL01018929
[OJIL] seawater metagenome; Sea water
55
131
+
Ile2
CAT
[ENA]
¡û
>WENV183057457
OLHL01002510
[OLHL] seawater metagenome; Sea water
4873
4797
-
Ile2
CAT
[ENA]
¡û
>WENV170130952
CENR01072338
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2653
2729
+
Met
CAT
[ENA]
¡û
>WENV170263437
CERC01047139
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1900
1824
-
Met
CAT
[ENA]
¡û
>WENV170613190
FUWD012787936
[FUWD] metagenome; unknown
327
251
-
Met
CAT
[ENA]
¡û
>WENV170658462
JTFP01115952
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
141
217
+
Met
CAT
[ENA]
¡û
>C181162788
CP028162
Gammaproteobacteria
Pseudomonas aeruginosa MRSN12280 [CP028162]
672925
672849
-
Met
CAT
-
¡û
>C191094528
CP032761
Gammaproteobacteria
Pseudomonas aeruginosa 268 [CP032761]
718163
718087
-
Met
CAT
-
¡û
>W09104453
AALS01000002
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
10977
11053
+
Met
CAT
[ENA]
¡û
>W1910645315
LVEC01000001
Gammaproteobacteria
Pseudomonas aeruginosa RNS_PA51 [LVEC]
85453
85529
+
Met
CAT
[ENA]
¡û
>W1910645415
LVED01000302
Gammaproteobacteria
Pseudomonas aeruginosa RNS_PA69 [LVED]
77663
77739
+
Met
CAT
[ENA]
¡û
>W1910645505
LVEF01000112
Gammaproteobacteria
Pseudomonas aeruginosa RNS_PAE08 [LVEF]
173338
173262
-
Met
CAT
[ENA]
¡û
>W1910645849
LWGS01000001
Gammaproteobacteria
Pseudomonas aeruginosa RNS_PA65 [LWGS]
47934
48010
+
Met
CAT
[ENA]
¡û
>W1910670817
MCLX01000006
Gammaproteobacteria
Pseudomonas aeruginosa 39016 [MCLX]
300346
300270
-
Met
CAT
[ENA]
¡û
>WENV026103
AACY020940673
Marine microbial communities from Global Ocean Sampling (GOS)
608
532
-
Met
CAT
[ENA]
>W1911708848
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
159498
159422
-
Met
CAT
[ENA]
¡û
>W1911828098
QZZH01000295
Gammaproteobacteria
Pseudomonas aeruginosa HUM-375 [QZZH]
7012
7088
+
Met
CAT
[ENA]
¡û
>W1810680793
QKRX01000007
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
182904
182828
-
Met
CAT
[ENA]
¡û
>W1810702863
QMGO01000001
Gammaproteobacteria
Pseudomonas aeruginosa AR_0456 [QMGO]
4437383
4437307
-
Met
CAT
[ENA]
¡û
>W1810901520
QVCG01000001
Gammaproteobacteria
Pseudomonas aeruginosa PABL063 [QVCG]
167352
167276
-
Met
CAT
[ENA]
¡û
>WENV030306
AACY021272746
Marine microbial communities from Global Ocean Sampling (GOS)
270
346
+
Met
CAT
[ENA]
>W2011282481
QPEP01000009
Gammaproteobacteria
Oceanospirillales bacterium WDS2A16A [QPEP]
159498
159422
-
Ile2
CAT
[ENA]
¡û
>SRA1051967
SRR035098.114835
454 Sequencing (SRP001819)
118
194
+
Met
CAT
[SRA]
>SRA1052889
SRR035098.293257
454 Sequencing (SRP001819)
127
51
-
Met
CAT
[SRA]
>W2012209716
VYTY01000002
Gammaproteobacteria
Nitrincola alkalisediminis JCM 19317 [VYTY]
315155
315231
+
Ile2
CAT
[ENA]
¡û
>W2012235716
WBYG01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-121 [WBYG]
266497
266573
+
Ile2
CAT
[ENA]
¡û
>W2012235767
WBYH01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-127 [WBYH]
486771
486847
+
Ile2
CAT
[ENA]
¡û
>W2012235829
WBYI01000004
Gammaproteobacteria
Marinobacterium sp. xm-a-152 [WBYI]
14200
14124
-
Ile2
CAT
[ENA]
¡û
>W2012235869
WBYJ01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-420 [WBYJ]
261666
261742
+
Ile2
CAT
[ENA]
¡û
>W2012235978
WBYL01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-510 [WBYL]
341328
341252
-
Ile2
CAT
[ENA]
¡û
>W2012236023
WBYM01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-530 [WBYM]
216689
216613
-
Ile2
CAT
[ENA]
¡û
>W2012236073
WBYN01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-543 [WBYN]
151554
151630
+
Ile2
CAT
[ENA]
¡û
>W2012236124
WBYO01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-564 [WBYO]
97871
97947
+
Ile2
CAT
[ENA]
¡û
>W2012236184
WBYP01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-579 [WBYP]
346775
346699
-
Ile2
CAT
[ENA]
¡û
>W2012236287
WBYR01000002
Gammaproteobacteria
Marinobacterium sp. xm-g-59 [WBYR]
239774
239698
-
Ile2
CAT
[ENA]
¡û
>W2012236328
WBYS01000001
Gammaproteobacteria
Marinobacterium sp. xm-m-312 [WBYS]
142682
142758
+
Ile2
CAT
[ENA]
¡û
>W2012236400
WBYT01000003
Gammaproteobacteria
Marinobacterium sp. xm-m-383 [WBYT]
223688
223612
-
Ile2
CAT
[ENA]
¡û
>W2012236436
WBYU01000002
Gammaproteobacteria
Marinobacterium sp. xm-v-233 [WBYU]
20600
20676
+
Ile2
CAT
[ENA]
¡û
>W2012236498
WBYV01000003
Gammaproteobacteria
Marinobacterium sp. xm-v-242 [WBYV]
223896
223820
-
Ile2
CAT
[ENA]
¡û
>W2110027190
BMIY01000007
Gammaproteobacteria
Pseudohongiella nitratireducens CGMCC 1.15425 [BMIY]
224589
224665
+
Ile2
CAT
[ENA]
¡û
>C211100084
CP054843
Gammaproteobacteria
Pseudomonas aeruginosa SE5352 [CP054843]
669677
669601
-
Ile2
CAT
-
¡û
>C211132724
CP060392
Gammaproteobacteria
Pseudomonas aeruginosa 1903031130 [CP060392]
669692
669616
-
Ile2
CAT
-
¡û
>C211385300
CP081345
Gammaproteobacteria
Pseudomonas aeruginosa F291007 [CP081345]
669955
669879
-
Ile2
CAT
-
¡û
>C231019851
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
3300369
3300445
+
Ile2
CAT
-
¡û
>C231244992
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
4239351
4239275
-
Ile2
CAT
-
¡û
>C231363872
CP095774
Gammaproteobacteria
Pseudomonas aeruginosa 34Pae8 [CP095774]
669940
669864
-
Ile2
CAT
-
¡û
>C241109078
CP046402
Gammaproteobacteria
Pseudomonas aeruginosa SE5331 [CP046402]
2476038
2476114
+
Ile2
CAT
-
¡û
>C241149275
CP051183
Gammaproteobacteria
Bermanella marisrubri RED65 [CP051183]
487288
487212
-
Ile2
CAT
-
¡û
>C241234538
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
3308586
3308510
-
Ile2
CAT
-
¡û
>C241242277
CP120707
Gammaproteobacteria
Pseudomonas aeruginosa NY5051 [CP120707]
676426
676350
-
Ile2
CAT
-
¡û
>W1511418720
JTWG01000016
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE14726 [JTWG]
92569
92493
-
Met
CAT
[ENA]
¡û
>W11135415
AEEX01000310
Gammaproteobacteria
Pseudomonas aeruginosa 39016 [AEEX]
77424
77500
+
Met
CAT
[ENA]
¡û
>C121000783
AP012280
Gammaproteobacteria
Pseudomonas aeruginosa NCGM2.S1 [AP012280]
5997713
5997789
+
Met
CAT
[Ensembl]
¡û
>WENV069535
AACY023771275
Marine microbial communities from Global Ocean Sampling (GOS)
725
649
-
Met
CAT
[ENA]
>W1610917252
LSMR01000170
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
16407
16483
+
Met
CAT
[ENA]
¡û
>W1610923936
LSZT01000008
Gammaproteobacteria
Pseudomonas aeruginosa [LSZT]
80691
80767
+
Met
CAT
[ENA]
¡û
>W1610924018
LSZU01000101
Gammaproteobacteria
Pseudomonas aeruginosa [LSZU]
80691
80767
+
Met
CAT
[ENA]
¡û
>W1610924075
LSZV01000073
Gammaproteobacteria
Pseudomonas aeruginosa [LSZV]
80691
80767
+
Met
CAT
[ENA]
¡û
>W1610940043
LUTR01000006
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
62640
62564
-
Met
CAT
[ENA]
¡û
>W1610940111
LUTS01000004
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
175594
175518
-
Met
CAT
[ENA]
¡û
>W1610987112
LWHM01000016
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-49 [LWHM]
224520
224596
+
Met
CAT
[ENA]
¡û
>W1610987155
LWHN01000018
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-111 [LWHN]
10340
10264
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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