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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166687 (13 seq.)
>A171003012
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
2206533
2206456
-
Pro
TGG
-
¡û
>A171004733
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3548700
3548774
+
Pro
TGG
-
¡û
>A171004866
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
706444
706368
-
Pro
TGG
-
¡û
>A171004918
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
765282
765206
-
Pro
TGG
-
¡û
>A171005374
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
2056968
2057045
+
Pro
TGG
-
¡û
>WENV170007760
AMWB02155675
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
11206
11129
-
Pro
TGG
[ENA]
¢þ
>W1910226818
FNCA01000002
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
207953
207876
-
Pro
TGG
[ENA]
¡û
>W1910229837
FOHQ01000001
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
156547
156470
-
Pro
TGG
[ENA]
¡û
>W1910230569
FOUJ01000002
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
172010
172087
+
Pro
TGG
[ENA]
¡û
>W1910783550
MPPA01000001
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
94596
94673
+
Pro
TGG
[ENA]
¡û
>W1911581808
PGGK01000002
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
255085
255008
-
Pro
TGG
[ENA]
¡û
>W1610032584
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1109723
1109800
+
Pseudo
TGG
[ENA]
¡û
>W1610670250
LKAZ01000041
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
49659
49737
+
Pseudo
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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