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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167468 (104 seq.)
>W1710821645
LKTU01000034
Betaproteobacteria
Variovorax paradoxus [LKTU]
15953
16029
+
Met
CAT
[ENA]
¡û
>W1710821688
LKTV01000039
Betaproteobacteria
Variovorax paradoxus [LKTV]
15953
16029
+
Met
CAT
[ENA]
¡û
>W1710821749
LKTW01000112
Betaproteobacteria
Variovorax paradoxus [LKTW]
16380
16304
-
Met
CAT
[ENA]
¡û
>W1710821789
LKTX01000028
Betaproteobacteria
Variovorax paradoxus [LKTX]
16876
16952
+
Met
CAT
[ENA]
¡û
>W1710860134
LMCQ01000019
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
185656
185732
+
Met
CAT
[ENA]
¡û
>W1710861752
LMDW01000004
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
15916
15992
+
Met
CAT
[ENA]
¡û
>W1710862493
LMEK01000022
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
53261
53185
-
Met
CAT
[ENA]
¡û
>W1710863068
LMEV01000003
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
46559
46483
-
Met
CAT
[ENA]
¡û
>W1711250085
LYMK01000015
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
98741
98665
-
Met
CAT
[ENA]
¡û
>W131174616
ARIP01000036
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
1152
1228
+
Met
CAT
[ENA]
¡û
>W131180328
ARNA01000040
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
16119
16195
+
Met
CAT
[ENA]
¡û
>WENV180026848
FTIU01289700
[FTIU] metagenome; soil
115
39
-
Ile2
CAT
[ENA]
¡û
>W141170372
AXXS01000036
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
6766
6842
+
Met
CAT
[ENA]
¡û
>WENV183741621
PJUG01000213
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
3958
3882
-
Ile2
CAT
[ENA]
¡û
>WENV183742112
PJUH01000315
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
3958
3882
-
Ile2
CAT
[ENA]
¡û
>WENV170559453
CXWL01124157
[CXWL] groundwater metagenome; biofilm material
4455
4531
+
Met
CAT
[ENA]
¡û
>WENV170707832
LNAP01035899
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23
99
+
Met
CAT
[ENA]
¡û
>WENV170708499
LNAP01088218
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
751
675
-
Met
CAT
[ENA]
¡û
>WENV171003333
NNBT01005057
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1498
1574
+
Met
CAT
[ENA]
¡û
>WENV171003594
NNBU01000667
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
9854
9930
+
Met
CAT
[ENA]
¡û
>WENV171003706
NNBV01000461
[NNBV] plant metagenome; symbiotic tissue sample KVS11
18182
18258
+
Met
CAT
[ENA]
¡û
>W09119959
ACEE01000055
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
20765
20689
-
Met
CAT
[ENA]
¡û
>C141002560
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
4752671
4752595
-
Met
CAT
[Ensembl]
¡û
>W1910792834
MRCN01000012
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
37575
37651
+
Met
CAT
[ENA]
¡û
>C09111113
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
4579967
4579891
-
Met
CAT
[Ensembl]
¡û
>W1911496675
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
1527458
1527534
+
Met
CAT
[ENA]
¡û
>W1911647349
QAJK01000065
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
77526
77450
-
Met
CAT
[ENA]
¡û
>W1911775319
QXMN01000023
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
91221
91145
-
Met
CAT
[ENA]
¡û
>W1810192698
PKMT01000001
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
634602
634678
+
Met
CAT
[ENA]
¡û
>W1810486684
QAYA01000026
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
23343
23419
+
Met
CAT
[ENA]
¡û
>W1810577526
QEOH01000004
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
210909
210833
-
Met
CAT
[ENA]
¡û
>W1810672555
QJTM01000024
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
23343
23419
+
Met
CAT
[ENA]
¡û
>W1810676123
QKLT01000027
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
23343
23419
+
Met
CAT
[ENA]
¡û
>W1810682493
QKUE01000024
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
27463
27387
-
Met
CAT
[ENA]
¡û
>W2010609300
JABMJH010000003
Betaproteobacteria
Variovorax sp. SG533 [JABMJH]
288515
288591
+
Ile2
CAT
[ENA]
¡û
>W2010717550
JACHYD010000005
Betaproteobacteria
Variovorax sp. Sphag1J [JACHYD]
102751
102675
-
Ile2
CAT
[ENA]
¡û
>W2010721699
JACIBG010000012
Betaproteobacteria
Variovorax sp. BK613 [JACIBG]
118720
118644
-
Ile2
CAT
[ENA]
¡û
>W2010727662
JACIFZ010000005
Betaproteobacteria
Variovorax guangxiensis 34/80 [JACIFZ]
11934
11858
-
Ile2
CAT
[ENA]
¡û
>W2010901296
MRCN01000012
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
37575
37651
+
Ile2
CAT
[ENA]
¡û
>W2011157579
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
1527458
1527534
+
Ile2
CAT
[ENA]
¡û
>W2011235333
QAJK01000065
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
77526
77450
-
Ile2
CAT
[ENA]
¡û
>W2011328876
QXMN01000023
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
91221
91145
-
Ile2
CAT
[ENA]
¡û
>W2011407890
RCZI01000005
Betaproteobacteria
Variovorax guangxiensis S06.C [RCZI]
217574
217650
+
Ile2
CAT
[ENA]
¡û
>W2011407930
RCZJ01000005
Betaproteobacteria
Variovorax ginsengisoli S09.D [RCZJ]
217574
217650
+
Ile2
CAT
[ENA]
¡û
>W2011482847
RQXU01000012
Betaproteobacteria
Variovorax sp. T529 [RQXU]
14981
14905
-
Ile2
CAT
[ENA]
¡û
>W2011494442
RWKH01000007
Betaproteobacteria
Variovorax sp. DXTD-1 [RWKH]
79631
79555
-
Ile2
CAT
[ENA]
¡û
>W2011494500
RWKI01000010
Betaproteobacteria
Variovorax sp. MHTC-1 [RWKI]
81267
81343
+
Ile2
CAT
[ENA]
¡û
>W2011495747
RXFQ01000017
Betaproteobacteria
Variovorax sp. 502 [RXFQ]
45153
45229
+
Ile2
CAT
[ENA]
¡û
>W2011495787
RXFR01000005
Betaproteobacteria
Variovorax sp. 553 [RXFR]
96978
96902
-
Ile2
CAT
[ENA]
¡û
>W2011495836
RXFS01000005
Betaproteobacteria
Variovorax sp. 679 [RXFS]
431318
431394
+
Ile2
CAT
[ENA]
¡û
>W2011498469
RXOE01000003
Betaproteobacteria
Variovorax gossypii DSM 100435 [RXOE]
316832
316908
+
Ile2
CAT
[ENA]
¡û
>W2011624494
SLYJ01000024
Betaproteobacteria
Variovorax sp. GV051 [SLYJ]
23343
23419
+
Ile2
CAT
[ENA]
¡û
>W2011625452
SLYZ01000003
Betaproteobacteria
Variovorax sp. GV008 [SLYZ]
210714
210638
-
Ile2
CAT
[ENA]
¡û
>W2011971339
VCCD02000002
Betaproteobacteria
Variovorax sp. KBS0712 [VCCD]
578876
578800
-
Ile2
CAT
[ENA]
¡û
>W2012046904
VIVL01000001
Betaproteobacteria
Variovorax sp. T529 [VIVL]
1212388
1212464
+
Ile2
CAT
[ENA]
¡û
>W2110079468
CAIGKF010000022
Betaproteobacteria
Variovorax paradoxus [CAIGKF]
51703
51627
-
Ile2
CAT
[ENA]
¡û
>W2110134424
JAAAFX010000004
Betaproteobacteria
Variovorax boronicumulans Xaverov 112 [JAAAFX]
2336104
2336180
+
Ile2
CAT
[ENA]
¡û
>W2110268649
JACVBS010000001
Betaproteobacteria
Variovorax sp. VRV01 [JACVBS]
332869
332945
+
Ile2
CAT
[ENA]
¡û
>W2110408623
JAEFCB010000002
Betaproteobacteria
Variovorax sp. IB41 [JAEFCB]
88991
89067
+
Ile2
CAT
[ENA]
¡û
>W2110457183
JAEVYQ010000624
Betaproteobacteria
Variovorax paradoxus BFB1_13 [JAEVYQ]
5627
5703
+
Ile2
CAT
[ENA]
¡û
>W2110541742
JAGGNV010000048
Betaproteobacteria
Variovorax paradoxus ISL-79 [JAGGNV]
61219
61295
+
Ile2
CAT
[ENA]
¡û
>W2110541795
JAGGNW010000026
Betaproteobacteria
Variovorax paradoxus ISL-81 [JAGGNW]
13913
13837
-
Ile2
CAT
[ENA]
¡û
>C201306941
LR594659
Betaproteobacteria
Variovorax sp. PBL-H6 [LR594659]
4894741
4894665
-
Ile2
CAT
-
¡û
>C211067341
CP046508
Betaproteobacteria
Variovorax sp. RKNM96 [CP046508]
5849861
5849785
-
Ile2
CAT
-
¡û
>C211132304
CP060295
Betaproteobacteria
Variovorax sp. PAMC26660 [CP060295]
1306739
1306663
-
Ile2
CAT
-
¡û
>C211132353
CP060296
Betaproteobacteria
Variovorax sp. PAMC28562 [CP060296]
247499
247423
-
Ile2
CAT
-
¡û
>C211172915
CP063166
Betaproteobacteria
Variovorax paradoxus VAI-C [CP063166]
5641723
5641647
-
Ile2
CAT
-
¡û
>W2110748887
MOWM01000044
Betaproteobacteria
Variovorax sp. E3 [MOWM]
47673
47749
+
Ile2
CAT
[ENA]
¡û
>C231461160
CP102931
Betaproteobacteria
Variovorax paradoxus JBCE486 [CP102931]
846869
846945
+
Ile2
CAT
-
¡û
>C241111939
CP046622
Betaproteobacteria
Variovorax paradoxus CSUSB [CP046622]
4685949
4685873
-
Ile2
CAT
-
¡û
>C241251414
CP123990
Betaproteobacteria
Variovorax paradoxus MGMM5 [CP123990]
2659799
2659875
+
Ile2
CAT
-
¡û
>C241342626
CP138513
Betaproteobacteria
Variovorax paradoxus SPNA7 [CP138513]
4878603
4878527
-
Ile2
CAT
-
¡û
>C241342670
CP138515
Betaproteobacteria
Variovorax paradoxus 2u118 [CP138515]
4663861
4663785
-
Ile2
CAT
-
¡û
>W1511352959
JROV01000272
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
334
258
-
Met
CAT
[ENA]
¡û
>C11123590
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
5431476
5431400
-
Met
CAT
[Ensembl]
¡û
>W1511508955
JXQQ01000136
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
13453
13377
-
Met
CAT
[ENA]
¡û
>W1511555012
JZWI01000030
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
4674
4750
+
Met
CAT
[ENA]
¡û
>C161073165
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
2928576
2928652
+
Met
CAT
[Ensembl]
¡û
>W1610072214
BCUT01000005
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
275215
275291
+
Met
CAT
[ENA]
¡û
>W1610072239
BCUU01000003
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
95777
95701
-
Met
CAT
[ENA]
¡û
>W121084970
AKIW01000064
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
15763
15687
-
Met
CAT
[ENA]
¡û
>W1610685650
LKTV01000039
Betaproteobacteria
Variovorax paradoxus [LKTV]
15953
16029
+
Met
CAT
[ENA]
¡û
>W1610685711
LKTW01000112
Betaproteobacteria
Variovorax paradoxus [LKTW]
16380
16304
-
Met
CAT
[ENA]
¡û
>W1610722480
LMCQ01000019
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
185656
185732
+
Met
CAT
[ENA]
¡û
>W1610724098
LMDW01000004
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
15916
15992
+
Met
CAT
[ENA]
¡û
>W1610724839
LMEK01000022
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
53261
53185
-
Met
CAT
[ENA]
¡û
>W1610725414
LMEV01000003
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
46559
46483
-
Met
CAT
[ENA]
¡û
>W1710069416
BCUT01000005
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
275215
275291
+
Met
CAT
[ENA]
¡û
>W1710069441
BCUU01000003
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
95777
95701
-
Met
CAT
[ENA]
¡û
>W1710506177
FMUJ01000002
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
6654
6730
+
Met
CAT
[ENA]
¡û
>W1710512952
FMZU01000015
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
139906
139830
-
Met
CAT
[ENA]
¡û
>W1710517943
FNDR01000004
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
134367
134291
-
Met
CAT
[ENA]
¡û
>W1710530055
FNOL01000035
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
33840
33764
-
Met
CAT
[ENA]
¡û
>W1710531384
FNPM01000017
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
18512
18588
+
Met
CAT
[ENA]
¡û
>W1710534029
FNRO01000003
Betaproteobacteria
Variovorax sp. YR216 [FNRO]
606159
606235
+
Met
CAT
[ENA]
¡û
>W1710538182
FNUI01000031
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
15990
15914
-
Met
CAT
[ENA]
¡û
>W1710542729
FNZJ01000013
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
185167
185091
-
Met
CAT
[ENA]
¡û
>W1710545322
FOBJ01000027
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
15791
15867
+
Met
CAT
[ENA]
¡û
>W1710554314
FOII01000025
Betaproteobacteria
Variovorax sp. OV084 [FOII]
15978
16054
+
Met
CAT
[ENA]
¡û
>W1710558170
FOLP01000013
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
185167
185091
-
Met
CAT
[ENA]
¡û
>W1710562290
FOOV01000045
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
16175
16099
-
Met
CAT
[ENA]
¡û
>W1710571845
FOWG01000001
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
1195323
1195247
-
Met
CAT
[ENA]
¡û
>W1710572137
FOWL01000016
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
142695
142771
+
Met
CAT
[ENA]
¡û
>W1710573298
FOXJ01000004
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
185439
185515
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK