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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167676 (43 seq.)
>W1711177589
LWGC01001563
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
8109
8185
+
Pro
GGG
[ENA]
¡û
>W1711177592
LWGC01001677
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
568
492
-
Pro
GGG
[ENA]
¡û
>W131063627
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
812624
812548
-
Pro
GGG
[ENA]
¡û
>W131171441
ARGF01000046
Gammaproteobacteria
Arhodomonas aquaeolei DSM 8974 [ARGF]
33470
33394
-
Pro
GGG
[ENA]
¡û
>W1711631594
MPRL01000007
Gammaproteobacteria
Solemya pervernicosa gill symbiont gill symbiont [MPRL]
61694
61618
-
Pro
GGG
[ENA]
¡û
>W131233916
AUKJ01000016
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AUKJ]
248409
248333
-
Pro
GGG
[ENA]
¡û
>C013300
AE017282
Gammaproteobacteria
Methylococcus capsulatus str. Bath [AE017282]
2305182
2305258
+
Pro
GGG
[Ensembl]
¡û
>w014127
AAOF01000001
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
488952
489028
+
Pro
GGG
[ENA]
¡û
>WENV180251113
OBEQ010341413
[OBEQ] groundwater metagenome; groundwater
293
369
+
Pro
GGG
[ENA]
¡û
>W141041633
AMCE01000114
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AMCE]
246800
246876
+
Pro
GGG
[ENA]
¡û
>WENV181173053
OEIV011166776
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
48
124
+
Pro
GGG
[ENA]
¡û
>WENV181189019
OEOE01581437
[OEOE] activated sludge metagenome; Activated Sludge
88
164
+
Pro
GGG
[ENA]
¡û
>WENV181404148
OGBZ01001655
[OGBZ] sediment metagenome; hot spring sediment
73
-1
-
Pro
GGG
[ENA]
¡û
>WENV170013842
AUZZ01011165
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
705
781
+
Pro
GGG
[ENA]
¡û
>WENV170607950
FUWD010873870
[FUWD] metagenome; unknown
37
113
+
Pro
GGG
[ENA]
¡û
>WENV170680241
LFCJ01006644
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6662
6586
-
Pro
GGG
[ENA]
¡û
>WENV170680402
LFCJ01010470
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1723
1799
+
Pro
GGG
[ENA]
¡û
>WENV170682232
LFFM01007689
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1022
1098
+
Pro
GGG
[ENA]
¡û
>WENV170683177
LFIK01006158
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
4091
4015
-
Pro
GGG
[ENA]
¡û
>WENV170703757
LKMJ01016457
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1034
958
-
Pro
GGG
[ENA]
¡û
>WENV170703800
LKMJ01016893
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1723
1799
+
Pro
GGG
[ENA]
¡û
>W1810586413
QFFI01000050
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
9215
9139
-
Pro
GGG
[ENA]
¡û
>W2010362830
CADDYU010000175
Gammaproteobacteria
Methylococcaceae bacterium [CADDYU]
3225
3149
-
Pro
GGG
[ENA]
¡û
>W2010679521
JACDUA010000027
Gammaproteobacteria
Ectothiorhodospiraceae bacterium WFHF3C12 [JACDUA]
2827
2751
-
Pro
GGG
[ENA]
¡û
>W2012309019
WEIF01000009
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WEIF]
30328
30252
-
Pro
GGG
[ENA]
¡û
>W2012325852
WHIW01000009
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WHIW]
30328
30252
-
Pro
GGG
[ENA]
¡û
>W2012352632
WJPP01000001
Gammaproteobacteria
Spiribacter sp. C176 [WJPP]
306490
306414
-
Pro
GGG
[ENA]
¡û
>W2012400744
WNXE01000019
Gammaproteobacteria
Arhodomonas sp. KWT [WNXE]
38819
38895
+
Pro
GGG
[ENA]
¡û
>W2110190726
JABWGZ010000006
Gammaproteobacteria
Methylococcus sp. BF19-07 [JABWGZ]
179567
179491
-
Pro
GGG
[ENA]
¡û
>C211001906
AP019783
Gammaproteobacteria
Methylomagnum ishizawai RS11D-Pr [AP019783]
3731881
3731957
+
Pro
GGG
-
¡û
>C211365224
CP079095
Gammaproteobacteria
Methylococcus sp. Mc7 [CP079095]
2700161
2700085
-
Pro
GGG
-
¡û
>C211365261
CP079096
Gammaproteobacteria
Methylococcus capsulatus BH [CP079096]
2771970
2771894
-
Pro
GGG
-
¡û
>C211365296
CP079097
Gammaproteobacteria
Methylococcus capsulatus KN2 [CP079097]
998826
998902
+
Pro
GGG
-
¡û
>C211365362
CP079098
Gammaproteobacteria
Methylococcus capsulatus IO1 [CP079098]
2511788
2511864
+
Pro
GGG
-
¡û
>C231230821
CP086615
Gammaproteobacteria
Spiribacter sp. E85 [CP086615]
1879868
1879944
+
Pro
GGG
-
¡û
>W2110748320
MBFX01000002
Gammaproteobacteria
Spiribacter salinus M7-304 [MBFX]
345662
345738
+
Pro
GGG
[ENA]
¡û
>C231379423
CP097161
Gammaproteobacteria
Methylococcus capsulatus MIR [CP097161]
3155999
3155923
-
Pro
GGG
-
¡û
>C231539717
CP110921
Gammaproteobacteria
Methylococcus sp. 16-5 [CP110921]
4247435
4247359
-
Pro
GGG
-
¡û
>C241105056
CP046046
Gammaproteobacteria
Spiribacter sp. 2438 [CP046046]
752667
752743
+
Pro
GGG
-
¡û
>C241111297
CP046565
Gammaproteobacteria
Methylococcus geothermalis IM1 [CP046565]
1606814
1606738
-
Pro
GGG
-
¡û
>W1511534218
JYNS01000001
Gammaproteobacteria
Methyloterricola oryzae 73a [JYNS]
578628
578552
-
Pro
GGG
[ENA]
¡û
>C131016221
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
727096
727172
+
Pro
GGG
[Ensembl]
¡û
>W1710607991
FXAM01000001
Gammaproteobacteria
Methylomagnum ishizawai 175 [FXAM]
3795172
3795248
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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