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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167850 (34 seq.)
>W131208447
ATHJ01000134
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
10529
10605
+
Thr
GGT
[ENA]
¡û
>C171038070
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
3363750
3363674
-
Thr
GGT
-
¡û
>C171100876
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
3363982
3363906
-
Thr
GGT
-
¡û
>W131110497
APJX01000001
Thermodesulfobacteriota
Desulfotignum phosphitoxidans DSM 13687 [APJX]
255434
255358
-
Thr
GGT
[ENA]
¡û
>W131169725
AREY01000008
Thermodesulfobacteriota
Desulfobacter curvatus DSM 3379 [AREY]
96742
96666
-
Thr
GGT
[ENA]
¡û
>W131217249
ATWO01000001
Thermodesulfobacteriota
Desulfotignum balticum DSM 7044 [ATWO]
872517
872593
+
Thr
GGT
[ENA]
¡û
>WENV180042311
LQAE01000286
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
104
28
-
Thr
GGT
[ENA]
¡û
>WENV180042519
LQAF01000806
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2938
3014
+
Thr
GGT
[ENA]
¡û
>WENV180042757
LQAG01000416
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
104
28
-
Thr
GGT
[ENA]
¡û
>WENV180043127
LQAH01003278
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2414
2490
+
Thr
GGT
[ENA]
¡û
>WENV180043515
LQAI01000178
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
12340
12416
+
Thr
GGT
[ENA]
¡û
>WENV180044020
LQAJ01000318
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
12369
12445
+
Thr
GGT
[ENA]
¡û
>WENV180044145
LQAJ01007795
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
347
271
-
Thr
GGT
[ENA]
¡û
>WENV180345821
OBLN01006765
[OBLN] sediment metagenome; sediment
1377
1301
-
Thr
GGT
[ENA]
¡û
>WENV183704821
PDWI01000665
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2638
2714
+
Thr
GGT
[ENA]
¡û
>WENV183717385
PDWJ01000843
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
28997
29073
+
Thr
GGT
[ENA]
¡û
>WENV183718118
PDWJ01002469
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
28811
28735
-
Thr
GGT
[ENA]
¡û
>WENV170005819
AMQJ01001114
[AMQJ] sediment metagenome; subsurface aquifer sediment
9895
9819
-
Thr
GGT
[ENA]
¡û
>WENV170528690
CEWJ01064787
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
733
657
-
Thr
GGT
[ENA]
¡û
>WENV170570532
FLOH01000009
[FLOH] marine metagenome; water
621224
621300
+
Thr
GGT
[ENA]
¡û
>WENV170645424
JMSV01004272
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
77
1
-
Thr
GGT
[ENA]
¡û
>WENV170901218
MDTD01166863
[MDTD] marine metagenome; seawater
2964
3040
+
Thr
GGT
[ENA]
¡û
>W141565679
JIBV01001633
Thermodesulfobacteriota
Desulfobacula sp. TS [JIBV]
884
808
-
Thr
GGT
[ENA]
¡û
>W1810695192
QLNI01000022
Thermodesulfobacteriota
Desulfobacter hydrogenophilus DSM 3380 [QLNI]
3275
3351
+
Thr
GGT
[ENA]
¡û
>W2010470372
JAAGRP010000020
Thermodesulfobacteriota
Desulfobacter hydrogenophilus DSM 3380 [JAAGRP]
3275
3351
+
Thr
GGT
[ENA]
¡û
>W2010653093
JACADJ010000006
Thermodesulfobacteriota
Desulfobacter latus AcRS2 [JACADJ]
65519
65443
-
Thr
GGT
[ENA]
¡û
>SRA1054018
SRR035099.35837
454 Sequencing (SRP001820)
149
225
+
Thr
GGT
[SRA]
>C211153446
CP061799
Thermodesulfobacteriota
Desulfonema limicola 5ac10 [CP061799]
1189799
1189875
+
Thr
GGT
-
¡û
>C231071919
CP054837
Thermodesulfobacteriota
Desulfobacter sp. [CP054837]
773562
773638
+
Thr
GGT
-
¡û
>C231071961
CP054837
Thermodesulfobacteriota
Desulfobacter sp. [CP054837]
1760529
1760453
-
Thr
GGT
-
¡û
>W121010944
AGJR02000013
Thermodesulfobacteriota
Desulfobacter postgatei 2ac9 [AGJR]
228025
228101
+
Thr
GGT
[ENA]
¡û
>C131018055
FO203503
Thermodesulfobacteriota
Desulfobacula toluolica Tol2 [FO203503]
4082989
4082913
-
Thr
GGT
[Ensembl]
¡û
>W1710527850
FNLL01000002
Thermodesulfobacteriota
Desulfobacula phenolica [FNLL]
549
473
-
Thr
GGT
[ENA]
¡û
>W1710600569
FUWN01000038
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
10601
10677
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK