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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168347 (12 seq.)
>w027415
ABCE01000002
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
112260
112336
+
Arg
CCT
[ENA]
¡û
>WENV170015049
AZIC01019736
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
614
540
-
Arg
CCT
[ENA]
¡û
>WENV170121154
CENL01054247
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
180042
180115
+
Arg
CCT
[ENA]
¡û
>WENV170668182
LADL02001648
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3257
3183
-
Arg
CCT
[ENA]
¡û
>SRA1027605
SRR035086.158753
454 Sequencing (SRP001807)
331
258
-
Arg
CCT
[SRA]
>W2012143744
VTSR01000006
Planctomycetota
Gimesia sp. JC646 [VTSR]
266847
266774
-
Arg
CCT
[ENA]
¡û
>C241044053
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
5586060
5585987
-
Arg
CCT
-
¡û
>C241044502
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
5822019
5821946
-
Arg
CCT
-
¡û
>C241044571
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
5541306
5541233
-
Arg
CCT
-
¡û
>C241069960
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
5740999
5740926
-
Arg
CCT
-
¡û
>C241083572
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
5934884
5934957
+
Arg
CCT
-
¡û
>C241083618
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
1957061
1957134
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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