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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.168586 (28 seq.)
>W1711317726
MAXQ01000257
Thermodesulfobacteriota
Desulfobulbaceae bacterium C00003063 [MAXQ]
13347
13423
+
Trp
CCA
[ENA]
¡û
>W1711423175
MICK01000114
Thermodesulfobacteriota
Syntrophobacterales bacterium GWF2_56_9 [MICK]
31477
31401
-
Trp
CCA
[ENA]
¡û
>W1711423256
MICO01000488
Thermodesulfobacteriota
Syntrophus sp. RIFOXYC2_FULL_54_9 [MICO]
3207
3283
+
Trp
CCA
[ENA]
¡û
>W1711629204
MPOS01000021
Unclassified
Deltaproteobacteria bacterium Phox-21 [MPOS]
14814
14738
-
Trp
CCA
[ENA]
¡û
>C007878
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
1255658
1255734
+
Trp
CCA
[Ensembl]
¡û
>WENV180094563
MTBK01015592
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
273
349
+
Trp
CCA
[ENA]
¡û
>WENV181208069
OFBA01015625
[OFBA] metagenome; hydrothermal vent
563
487
-
Trp
CCA
[ENA]
¡û
>WENV183513080
OMKS01002592
[OMKS] sediment metagenome; hot spring sediment
14736
14660
-
Trp
CCA
[ENA]
¡û
>WENV183718258
PDWJ01003070
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
16039
15963
-
Trp
CCA
[ENA]
¡û
>WENV183746989
PPCM01000083
[PPCM] marine sediment metagenome; marine sediment
72605
72529
-
Trp
CCA
[ENA]
¡û
>WENV170603421
FUWD010308813
[FUWD] metagenome; unknown
12
88
+
Trp
CCA
[ENA]
¡û
>WENV170625888
FUWD013208302
[FUWD] metagenome; unknown
1142
1066
-
Trp
CCA
[ENA]
¡û
>WENV170634105
FUWD013409918
[FUWD] metagenome; unknown
1142
1066
-
Trp
CCA
[ENA]
¡û
>WENV170694242
LGVD01024577
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
485
409
-
Trp
CCA
[ENA]
¡û
>WENV170695302
LGVE01073287
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
378
302
-
Trp
CCA
[ENA]
¡û
>WENV170697109
LGVF01082094
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
80
4
-
Trp
CCA
[ENA]
¡û
>WENV170697446
LGVF01136222
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
494
570
+
Trp
CCA
[ENA]
¡û
>W1910441916
FWEV01000015
Thermodesulfobacteriota
Desulfamplus magnetovallimortis [FWEV]
43768
43692
-
Trp
CCA
[ENA]
¡û
>C09103727
CP001087
Thermodesulfobacteriota
Desulforapulum autotrophicum HRM2 [CP001087]
4090864
4090788
-
Trp
CCA
[Ensembl]
¡û
>SRA1033872
SRR035088.386174
454 Sequencing (SRP001809)
379
303
-
Trp
CCA
[SRA]
>W2010405341
FWEV01000015
Thermodesulfobacteriota
Desulfamplus magnetovallimortis [FWEV]
43768
43692
-
Trp
CCA
[ENA]
¡û
>SRA1039147
SRR035090.432324
454 Sequencing (SRP001811)
511
435
-
Trp
CCA
[SRA]
>SRA1048083
SRR035094.105964
454 Sequencing (SRP001815)
278
202
-
Trp
CCA
[SRA]
>SRA1054128
SRR035099.66366
454 Sequencing (SRP001820)
94
18
-
Trp
CCA
[SRA]
>SRA1054560
SRR035099.163802
454 Sequencing (SRP001820)
22
98
+
Trp
CCA
[SRA]
>W2110504194
JAFITO010000008
Thermodesulfobacteriota
Desulfotalea psychrophila [JAFITO]
8008
8084
+
Trp
CCA
[ENA]
¡û
>C131010879
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
2297950
2298026
+
Trp
CCA
[Ensembl]
¡û
>W1710606604
FWXY01000001
Thermodesulfobacteriota
Desulfocicer vacuolatum DSM 3385 [FWXY]
73582
73506
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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