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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169821 (26 seq.)
>WENV180063488
MPLX02356423
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
556
480
-
Asp
GTC
[ENA]
¡û
>WENV180594371
OCOZ01015496
[OCOZ] marine metagenome; vv
74
150
+
Asp
GTC
[ENA]
¡û
>WENV180636053
OCRE01049332
[OCRE] marine metagenome; Seawater
388
312
-
Asp
GTC
[ENA]
¡û
>W08003862
ABGO01000054
Planctomycetota
Gemmata obscuriglobus UQM 2246 [ABGO]
2218
2292
+
Asp
GTC
[ENA]
¡û
>WENV182580248
OJGU01023831
[OJGU] seawater metagenome; Sea water
274
198
-
Asp
GTC
[ENA]
¡û
>W141258243
CBXA010000041
Planctomycetota
Gemmata massiliana IIL30 [CBXA]
11326
11250
-
Asp
GTC
[ENA]
¡û
>WENV183618305
OOFN01020170
[OOFN] marine metagenome; seawater
68
142
+
Asp
GTC
[ENA]
¡û
>WENV183677718
ORJL011792413
[ORJL] groundwater metagenome; groundwater
86
160
+
Asp
GTC
[ENA]
¡û
>WENV183686873
ORMF011063969
[ORMF] groundwater metagenome; groundwater
1899
1975
+
Asp
GTC
[ENA]
¡û
>WENV183692306
ORMF011899185
[ORMF] groundwater metagenome; groundwater
270
196
-
Asp
GTC
[ENA]
¡û
>WENV183807205
PVBE011179437
[PVBE] marine metagenome; water
427
504
+
Asp
GTC
[ENA]
¡û
>WENV170247274
CEQQ01026486
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12802
12728
-
Asp
GTC
[ENA]
¡û
>WENV170252493
CEQU01010721
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2367
2293
-
Asp
GTC
[ENA]
¡û
>WENV170500655
CEVU01035116
[CEVU] marine metagenome genome assembly TARA_151_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
177
103
-
Asp
GTC
[ENA]
¡û
>C181124555
CP025958
Planctomycetota
Gemmata obscuriglobus DSM 5831 [CP025958]
4786722
4786648
-
Asp
GTC
-
¡û
>SRA1005318
SRR006907.174803
metagenomic water samples (SRP000427)
137
213
+
Asp
GTC
[SRA]
>W2010166757
CABFKD010000002
Planctomycetota
Gemmataceae bacterium [CABFKD]
93625
93699
+
Asp
GTC
[ENA]
¡û
>W2010681118
JACEFB010000002
Planctomycetota
thermophilic bacterium 2918 [JACEFB]
275125
275199
+
Asp
GTC
[ENA]
¡û
>W2110559621
JAGKQQ010000001
Planctomycetota
Gemmata palustris G18 [JAGKQQ]
5882966
5882892
-
Asp
GTC
[ENA]
¡û
>C241043799
CP036273
Planctomycetota
Urbifossiella limnaea ETA_A1 [CP036273]
3852576
3852650
+
Asp
GTC
-
¡û
>C241043874
CP036274
Planctomycetota
Anatilimnocola aggregata ETA_A8 [CP036274]
8162753
8162827
+
Asp
GTC
-
¡û
>C241069988
CP042911
Planctomycetota
Gemmata obscuriglobus DSM 5831 [CP042911]
3233637
3233711
+
Asp
GTC
-
¡û
>C241156387
CP053452
Planctomycetota
Frigoriglobus tundricola PL17 [CP053452]
2357250
2357324
+
Asp
GTC
-
¡û
>C241380002
LR593886
Planctomycetota
Gemmata massiliana [LR593886]
9319991
9320065
+
Asp
GTC
-
¡û
>C241380042
LR593887
Planctomycetota
Tuwongella immobilis [LR593887]
2218872
2218947
+
Asp
GTC
-
¡û
>C161033292
CP011271
Planctomycetota
Gemmata sp. SH-PL17 [CP011271]
706092
706166
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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