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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.169968 (27 seq.)
>W131214427
ATUD01000013
Actinomycetota
Patulibacter americanus DSM 16676 [ATUD]
90405
90479
+
Ile
GAT
[ENA]
¡û
>WENV180016898
FSVZ01000063
[FSVZ] metagenome; soil
5775
5849
+
Ile
GAT
[ENA]
¡û
>WENV180018960
FTBE01000049
[FTBE] metagenome; soil
4919
4845
-
Ile
GAT
[ENA]
¡û
>WENV180022476
FTGG01000752
[FTGG] metagenome; soil
2671
2744
+
Ile
GAT
[ENA]
¡û
>WENV180022488
FTGH01000138
[FTGH] metagenome; soil
497
570
+
Ile
GAT
[ENA]
¡û
>WENV180291674
OBIV01128087
[OBIV] soil metagenome; Clay
320
246
-
Ile
GAT
[ENA]
¡û
>WENV180291962
OBIV01245992
[OBIV] soil metagenome; Clay
150
223
+
Ile
GAT
[ENA]
¡û
>WENV180343704
OBLK01065332
[OBLK] soil metagenome; Clay
399
326
-
Ile
GAT
[ENA]
¡û
>WENV181162403
OEIN01126960
[OEIN] soil metagenome; soil
122
49
-
Ile
GAT
[ENA]
¡û
>WENV181163009
OEIO01061581
[OEIO] marine metagenome; sea ice
122
47
-
Ile
GAT
[ENA]
¡û
>WENV181192852
OEPS011123548
[OEPS] soil metagenome; soil
207
134
-
Ile
GAT
[ENA]
¡û
>WENV181387093
OFRL01041143
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
615
542
-
Ile
GAT
[ENA]
¡û
>WENV181401112
OFSF01056799
[OFSF] wastewater metagenome; Exp Tend VB 100WW
585
512
-
Ile
GAT
[ENA]
¡û
>W141278332
JAFH01000018
Actinomycetota
Patulibacter minatonensis DSM 18081 [JAFH]
270760
270686
-
Ile
GAT
[ENA]
¡û
>WENV170573446
FLYK01027431
[FLYK] hot springs metagenome; Sediment
148
74
-
Ile
GAT
[ENA]
¡û
>WENV170575107
FLYN01032299
[FLYN] hot springs metagenome; Sediment
270
344
+
Ile
GAT
[ENA]
¡û
>WENV170648687
JRHI01001422
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
11209
11135
-
Ile
GAT
[ENA]
¡û
>SRA1015140
SRR023845.475668
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
198
274
+
Ile
GAT
[SRA]
>W2010711695
JACHNU010000001
Actinomycetota
Conexibacter arvalis DSM 23288 [JACHNU]
668537
668611
+
Ile
GAT
[ENA]
¡û
>W2011373684
RBIL01000001
Actinomycetota
Solirubrobacter pauli DSM 14954 [RBIL]
2400389
2400463
+
Ile
GAT
[ENA]
¡û
>C211191204
CP064356
Actinomycetota
Gaiellales bacterium SCSIO 61214 [CP064356]
3671383
3671457
+
Ile
GAT
-
¡û
>C211191901
CP064655
Actinomycetota
Gaiellales bacterium SCSIO 60955 [CP064655]
3362212
3362286
+
Ile
GAT
-
¡û
>C231063788
CP053031
Actinomycetota
Thermoleophilia bacterium SCSIO 60948 [CP053031]
3416441
3416368
-
Ile
GAT
-
¡û
>C231379149
CP097127
Actinomycetota
Conexibacter sp. S30A1 [CP097127]
2512197
2512270
+
Ile
GAT
-
¡û
>C231379225
CP097128
Actinomycetota
Conexibacter sp. DBS9H8 [CP097128]
552581
552507
-
Ile
GAT
-
¡û
>C231403071
CP098502
Actinomycetota
Paraconexibacter antarcticus 02-257 [CP098502]
5133328
5133254
-
Ile
GAT
-
¡û
>C10104679
CP001854
Actinomycetota
Conexibacter woesei DSM 14684 [CP001854]
6353884
6353810
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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