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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.170965 (111 seq.)
>W1711581249
MNTW01000001
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
71667
71591
-
Arg
TCT
[ENA]
¡û
>C171129859
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
13194
13118
-
Arg
TCT
-
¡û
>W131208367
ATHI01000005
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
278094
278170
+
Arg
TCT
[ENA]
¡û
>W131236088
AUMA01000003
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
278184
278108
-
Arg
TCT
[ENA]
¡û
>WENV180326237
OBKS01044197
[OBKS] human gut metagenome; human gut
101
25
-
Arg
TCT
[ENA]
¡û
>WENV180534488
OCHM01011698
[OCHM] human gut metagenome; human gut
499
575
+
Arg
TCT
[ENA]
¡û
>WENV180762318
ODHZ01100135
[ODHZ] human metagenome; G_DNA_Stool
439
363
-
Arg
TCT
[ENA]
¡û
>WENV181332632
OFMA01003668
[OFMA] human gut metagenome; human gut
5737
5661
-
Arg
TCT
[ENA]
¡û
>WENV181411922
OGCI01059850
[OGCI] hot springs metagenome; Hot spring water
277
201
-
Arg
TCT
[ENA]
¡û
>WENV181446149
OGDS01080401
[OGDS] metagenome; Human gut stool
195
119
-
Arg
TCT
[ENA]
¡û
>WENV181460853
OGEL01080402
[OGEL] metagenome; Human gut stool
195
119
-
Arg
TCT
[ENA]
¡û
>WENV181505192
OGGK01005468
[OGGK] metagenome; Human gut stool
4060
4136
+
Arg
TCT
[ENA]
¡û
>WENV181540096
OGIA01003561
[OGIA] metagenome; Human gut stool
676
752
+
Arg
TCT
[ENA]
¡û
>WENV181578315
OGJY01000930
[OGJY] metagenome; Human gut stool
10033
9957
-
Arg
TCT
[ENA]
¡û
>WENV181621547
OGMF01008216
[OGMF] metagenome; Human gut stool
3446
3370
-
Arg
TCT
[ENA]
¡û
>WENV181637353
OGNB01005376
[OGNB] metagenome; Human gut stool
1020
944
-
Arg
TCT
[ENA]
¡û
>WENV181641390
OGNF01003501
[OGNF] metagenome; Human gut stool
4127
4203
+
Arg
TCT
[ENA]
¡û
>WENV181664889
OGOI01044165
[OGOI] human gut metagenome; faeces
287
363
+
Arg
TCT
[ENA]
¡û
>WENV181667621
OGOK01035876
[OGOK] human gut metagenome; faeces
253
177
-
Arg
TCT
[ENA]
¡û
>WENV181669509
OGOL01044644
[OGOL] human gut metagenome; faeces
521
445
-
Arg
TCT
[ENA]
¡û
>WENV181676158
OGOP01037881
[OGOP] human gut metagenome; faeces
1055
1131
+
Arg
TCT
[ENA]
¡û
>WENV181678128
OGOQ01054805
[OGOQ] human gut metagenome; faeces
430
506
+
Arg
TCT
[ENA]
¡û
>WENV181710171
OGPN01027092
[OGPN] human gut metagenome; faeces
51
127
+
Arg
TCT
[ENA]
¡û
>WENV181718718
OGPT01042522
[OGPT] human gut metagenome; faeces
931
855
-
Arg
TCT
[ENA]
¡û
>WENV181727875
OGQA01007046
[OGQA] human gut metagenome; faeces
4092
4168
+
Arg
TCT
[ENA]
¡û
>WENV181752870
OGQQ01023217
[OGQQ] human gut metagenome; faeces
534
610
+
Arg
TCT
[ENA]
¡û
>WENV181767241
OGQZ01026239
[OGQZ] human gut metagenome; faeces
216
140
-
Arg
TCT
[ENA]
¡û
>WENV181873759
OGXA01001540
[OGXA] human gut metagenome; faeces
682
758
+
Arg
TCT
[ENA]
¡û
>WENV181883714
OGXI01009951
[OGXI] human gut metagenome; faeces
1609
1533
-
Arg
TCT
[ENA]
¡û
>WENV181885488
OGXJ01024091
[OGXJ] human gut metagenome; faeces
1241
1165
-
Arg
TCT
[ENA]
¡û
>WENV181898600
OGXT01007948
[OGXT] human gut metagenome; faeces
2442
2366
-
Arg
TCT
[ENA]
¡û
>WENV181902579
OGXW01044762
[OGXW] human gut metagenome; faeces
969
1045
+
Arg
TCT
[ENA]
¡û
>WENV181903489
OGXX01001386
[OGXX] human gut metagenome; faeces
5386
5310
-
Arg
TCT
[ENA]
¡û
>WENV181913444
OGYE01008533
[OGYE] human gut metagenome; faeces
2405
2481
+
Arg
TCT
[ENA]
¡û
>WENV181923157
OGYK01069417
[OGYK] human gut metagenome; faeces
302
378
+
Arg
TCT
[ENA]
¡û
>WENV181929210
OGYO01013459
[OGYO] human gut metagenome; faeces
1178
1254
+
Arg
TCT
[ENA]
¡û
>WENV181942891
OGYZ01001807
[OGYZ] human gut metagenome; faeces
2760
2684
-
Arg
TCT
[ENA]
¡û
>WENV181953132
OGZI01002835
[OGZI] human gut metagenome; faeces
1719
1795
+
Arg
TCT
[ENA]
¡û
>WENV181955313
OGZK01002445
[OGZK] human gut metagenome; faeces
13274
13350
+
Arg
TCT
[ENA]
¡û
>WENV181960757
OGZO01001078
[OGZO] human gut metagenome; faeces
4354
4278
-
Arg
TCT
[ENA]
¡û
>WENV181973295
OHAA01024155
[OHAA] human gut metagenome; faeces
507
431
-
Arg
TCT
[ENA]
¡û
>WENV181980302
OHAF01017805
[OHAF] human gut metagenome; faeces
577
653
+
Arg
TCT
[ENA]
¡û
>WENV181985045
OHAJ01000457
[OHAJ] human gut metagenome; faeces
26900
26824
-
Arg
TCT
[ENA]
¡û
>WENV181991459
OHAQ01002517
[OHAQ] human gut metagenome; faeces
790
866
+
Arg
TCT
[ENA]
¡û
>WENV182007371
OHBH01011327
[OHBH] human gut metagenome; feces
214
138
-
Arg
TCT
[ENA]
¡û
>WENV182012293
OHBM01016085
[OHBM] human gut metagenome; faeces
1908
1832
-
Arg
TCT
[ENA]
¡û
>W141201081
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
612376
612300
-
Arg
TCT
[ENA]
¡û
>WENV182114351
OHIY01018472
[OHIY] human gut metagenome; feces
958
882
-
Arg
TCT
[ENA]
¡û
>WENV182171813
OHMX01030681
[OHMX] human gut metagenome; feces
72
148
+
Arg
TCT
[ENA]
¡û
>WENV182186443
OHOI01046711
[OHOI] human gut metagenome; feces
394
318
-
Arg
TCT
[ENA]
¡û
>WENV182187872
OHOK01057571
[OHOK] human gut metagenome; feces
422
346
-
Arg
TCT
[ENA]
¡û
>WENV182249191
OHSP01022137
[OHSP] human gut metagenome; feces
882
806
-
Arg
TCT
[ENA]
¡û
>WENV182267533
OHTZ01054165
[OHTZ] human gut metagenome; feces
438
362
-
Arg
TCT
[ENA]
¡û
>WENV182318653
OHYF01046107
[OHYF] human gut metagenome; feces
568
492
-
Arg
TCT
[ENA]
¡û
>WENV182510434
OIWK01002082
[OIWK] human gut metagenome; faeces
3474
3398
-
Arg
TCT
[ENA]
¡û
>WENV182616779
OJKC01060840
[OJKC] metagenome; faeces
304
380
+
Arg
TCT
[ENA]
¡û
>WENV182655241
OJMI01024669
[OJMI] human gut metagenome; feces
1198
1274
+
Arg
TCT
[ENA]
¡û
>WENV182675971
OJNQ01031957
[OJNQ] human gut metagenome; feces
68
144
+
Arg
TCT
[ENA]
¡û
>WENV182699476
OJON01036958
[OJON] human gut metagenome; human gut
796
720
-
Arg
TCT
[ENA]
¡û
>WENV182720626
OJPN01034308
[OJPN] human gut metagenome; stool sample
607
683
+
Arg
TCT
[ENA]
¡û
>WENV182732107
OJQA01039067
[OJQA] human gut metagenome; stool sample
47
123
+
Arg
TCT
[ENA]
¡û
>WENV182881472
OKSA01010649
[OKSA] human gut metagenome; faeces
1576
1652
+
Arg
TCT
[ENA]
¡û
>WENV182888773
OKSE01004233
[OKSE] human gut metagenome; faeces
2274
2350
+
Arg
TCT
[ENA]
¡û
>WENV183026831
OLFU01006147
[OLFU] human gut metagenome; faeces
2023
1947
-
Arg
TCT
[ENA]
¡û
>WENV183028512
OLFV01002815
[OLFV] human gut metagenome; faeces
10143
10219
+
Arg
TCT
[ENA]
¡û
>WENV183030176
OLFW01041292
[OLFW] human gut metagenome; faeces
81
157
+
Arg
TCT
[ENA]
¡û
>WENV183033528
OLFY01004212
[OLFY] human gut metagenome; faeces
9845
9921
+
Arg
TCT
[ENA]
¡û
>WENV183035176
OLFZ01002082
[OLFZ] human gut metagenome; faeces
13837
13913
+
Arg
TCT
[ENA]
¡û
>WENV183037099
OLGA01007683
[OLGA] human gut metagenome; faeces
2611
2687
+
Arg
TCT
[ENA]
¡û
>WENV183156824
OLOS01039634
[OLOS] human gut metagenome; faeces
219
143
-
Arg
TCT
[ENA]
¡û
>WENV183258477
OLRN01006202
[OLRN] human gut metagenome; faeces
1922
1846
-
Arg
TCT
[ENA]
¡û
>WENV183275430
OLRY01062828
[OLRY] human gut metagenome; faeces
433
509
+
Arg
TCT
[ENA]
¡û
>WENV183338975
OLWK01006990
[OLWK] human gut metagenome; feces
3127
3203
+
Arg
TCT
[ENA]
¡û
>WENV183340069
OLWL01002470
[OLWL] human gut metagenome; feces
1776
1700
-
Arg
TCT
[ENA]
¡û
>WENV183360207
OLXI01008350
[OLXI] human gut metagenome; feces
86
10
-
Arg
TCT
[ENA]
¡û
>WENV183377948
OLYB01106705
[OLYB] human gut metagenome; feces
98
22
-
Arg
TCT
[ENA]
¡û
>WENV183381865
OLYK01001786
[OLYK] human gut metagenome; feces
5489
5562
+
Arg
TCT
[ENA]
¡û
>WENV183532880
OOAD01019192
[OOAD] human gut metagenome; human gut
477
401
-
Arg
TCT
[ENA]
¡û
>WENV183540196
OOAJ01004411
[OOAJ] human gut metagenome; human gut
2045
2121
+
Arg
TCT
[ENA]
¡û
>WENV183574394
OOCH01010828
[OOCH] human gut metagenome; human gut
314
238
-
Arg
TCT
[ENA]
¡û
>WENV183575409
OOCI01001678
[OOCI] human gut metagenome; human gut
6259
6183
-
Arg
TCT
[ENA]
¡û
>WENV183579993
OOCM01010731
[OOCM] human gut metagenome; human gut
1837
1913
+
Arg
TCT
[ENA]
¡û
>WENV183584094
OOCQ01002172
[OOCQ] human gut metagenome; human gut
903
827
-
Arg
TCT
[ENA]
¡û
>WENV183597832
OODF01007084
[OODF] human gut metagenome; human gut
1389
1465
+
Arg
TCT
[ENA]
¡û
>WENV183601134
OODJ01000325
[OODJ] human gut metagenome; human gut
36338
36262
-
Arg
TCT
[ENA]
¡û
>WENV183604228
OODL01001847
[OODL] human gut metagenome; human gut
13320
13396
+
Arg
TCT
[ENA]
¡û
>WENV183632673
OOIF01010651
[OOIF] human gut metagenome; human gut
2542
2466
-
Arg
TCT
[ENA]
¡û
>WENV183633888
OOIG01003957
[OOIG] human gut metagenome; human gut
501
425
-
Arg
TCT
[ENA]
¡û
>WENV183787394
PPYF01324014
[PPYF] human gut metagenome; stool from patient with Crohn's disease
251
327
+
Arg
TCT
[ENA]
¡û
>WENV170057588
CDZG01043078
[CDZG] gut metagenome; human stools
3671
3747
+
Arg
TCT
[ENA]
¡û
>WENV170059207
CDZH01037934
[CDZH] gut metagenome; human stools
368
292
-
Arg
TCT
[ENA]
¡û
>WENV170060401
CDZI01003060
[CDZI] gut metagenome; human stools
156
80
-
Arg
TCT
[ENA]
¡û
>WENV170074575
CDZT01000573
[CDZT] gut metagenome; human stools
8978
9054
+
Arg
TCT
[ENA]
¡û
>WENV170076375
CDZU01001429
[CDZU] gut metagenome; human stools
8987
9063
+
Arg
TCT
[ENA]
¡û
>WENV170078573
CDZV01031377
[CDZV] gut metagenome; human stools
203
127
-
Arg
TCT
[ENA]
¡û
>WENV170089317
CEAF01002946
[CEAF] gut metagenome; human stools
1147
1071
-
Arg
TCT
[ENA]
¡û
>WENV170091164
CEAG01001089
[CEAG] gut metagenome; human stools
558
634
+
Arg
TCT
[ENA]
¡û
>WENV170093897
CEAH01044732
[CEAH] gut metagenome; human stools
41
117
+
Arg
TCT
[ENA]
¡û
>WENV170094414
CEAH01068649
[CEAH] gut metagenome; human stools
338
262
-
Arg
TCT
[ENA]
¡û
>WENV170110685
CECF01039347
[CECF] gut metagenome; human stools
297
221
-
Arg
TCT
[ENA]
¡û
>WENV170715159
LNQE01000020
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
3694
3618
-
Arg
TCT
[ENA]
¡û
>W09112342
ABXU01000018
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
246
170
-
Arg
TCT
[ENA]
¡û
>W2010264078
CABKOD020000045
Thermodesulfobacteriota
Desulfovibrio piger [CABKOD]
246
170
-
Arg
TCT
[ENA]
¡û
>W2010470435
JAAGRQ010000079
Thermodesulfobacteriota
Desulfovibrio sulfodismutans DSM 3696 [JAAGRQ]
15462
15386
-
Arg
TCT
[ENA]
¡û
>W2110225145
JACJLW010000040
Thermodesulfobacteriota
Desulfovibrio piger An418 [JACJLW]
6268
6192
-
Arg
TCT
[ENA]
¡û
>W2110225276
JACJLY010000037
Thermodesulfobacteriota
Desulfovibrio piger An401 [JACJLY]
17266
17342
+
Arg
TCT
[ENA]
¡û
>C241097167
CP045504
Thermodesulfobacteriota
Desulfolutivibrio sulfodismutans DSM 3696 [CP045504]
4082234
4082310
+
Arg
TCT
-
¡û
>C241097216
CP045506
Thermodesulfobacteriota
Desulfolutivibrio sulfoxidireducens DSM 106783 [CP045506]
3200024
3199948
-
Arg
TCT
-
¡û
>C241097274
CP045508
Thermodesulfobacteriota
Desulfolutivibrio sulfoxidireducens DSM 107105 [CP045508]
3081534
3081458
-
Arg
TCT
-
¡û
>C241311606
CP133659
Thermodesulfobacteriota
Nitratidesulfovibrio liaohensis KPS [CP133659]
1801756
1801680
-
Arg
TCT
-
¡û
>C241390241
OX636706
Thermodesulfobacteriota
Desulfovibrio piger [OX636706]
2886657
2886733
+
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK