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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172608 (13 seq.)
>W1711579580
MNRW01000078
Bacillota
Clostridium sp. CAG_433_25_7 [MNRW]
2334
2409
+
Arg
ACG
[ENA]
¡û
>WENV182169505
OHMU01003065
[OHMU] human gut metagenome; feces
2257
2182
-
Arg
ACG
[ENA]
¡û
>WENV182416746
OIGD01003049
[OIGD] human gut metagenome; human gut
4085
4160
+
Arg
ACG
[ENA]
¡û
>WENV182650514
OJMH01000041
[OJMH] human gut metagenome; feces
64753
64828
+
Arg
ACG
[ENA]
¡û
>WENV182728659
OJPW01028966
[OJPW] human gut metagenome; stool sample
336
412
+
Arg
ACG
[ENA]
¡û
>WENV182906576
OKTD01007674
[OKTD] human gut metagenome; feces
397
322
-
Arg
ACG
[ENA]
¡û
>WENV182959805
OKWJ01000612
[OKWJ] human gut metagenome; human gut
4656
4731
+
Arg
ACG
[ENA]
¡û
>WENV182972784
OKXI01088566
[OKXI] human gut metagenome; human gut
307
382
+
Arg
ACG
[ENA]
¡û
>WENV170078435
CDZV01025230
[CDZV] gut metagenome; human stools
12282
12358
+
Arg
ACG
[ENA]
¡û
>W2010250653
CABIYJ020000001
Bacillota
Clostridiaceae bacterium [CABIYJ]
377339
377263
-
Arg
ACG
[ENA]
¡û
>W2011668754
SPGS01000001
Bacillota
Clostridium sp. BSD2780061688st1 E8 BSD2780061688st1_E8 [SPGS]
328044
327968
-
Arg
ACG
[ENA]
¡û
>W2110247647
JACRSO010000003
Bacillota
Christensenellaceae bacterium NSJ-44 [JACRSO]
278707
278783
+
Arg
ACG
[ENA]
¡û
>W2110357219
JADNOJ010000001
Bacillota
Clostridium sp. BSD2780061688b_171218_E8 [JADNOJ]
328044
327968
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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