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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172755 (131 seq.)
>W1711136514
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
103701
103777
+
Met
CAT
[ENA]
¡û
>WENV180009901
FLSC01149301
[FLSC] metagenome; saliva
142
66
-
Ile2
CAT
[ENA]
¡û
>WENV180012050
FLSK01147368
[FLSK] metagenome; saliva
43
119
+
Ile2
CAT
[ENA]
¡û
>WENV180042576
LQAF01007068
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
511
587
+
Ile2
CAT
[ENA]
¡û
>WENV180043260
LQAH01017218
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
473
397
-
Ile2
CAT
[ENA]
¡û
>WENV180043619
LQAI01002715
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1497
1421
-
Ile2
CAT
[ENA]
¡û
>WENV180044115
LQAJ01005729
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
438
514
+
Ile2
CAT
[ENA]
¡û
>WENV180120387
OASL01119961
[OASL] human gut metagenome; ENVO:feces
168
92
-
Ile2
CAT
[ENA]
¡û
>WENV180200934
OBAF01000191
[OBAF] human gut metagenome; human gut
47253
47329
+
Ile2
CAT
[ENA]
¡û
>WENV180215121
OBAQ01000194
[OBAQ] human gut metagenome; human gut
58912
58988
+
Ile2
CAT
[ENA]
¡û
>WENV180237068
OBCW01058392
[OBCW] human gut metagenome; human gut
174
98
-
Ile2
CAT
[ENA]
¡û
>WENV180279479
OBHX01041346
[OBHX] metagenome; feces
555
631
+
Ile2
CAT
[ENA]
¡û
>WENV180402548
OBRP01007608
[OBRP] human gut metagenome; ENVO:feces
230
306
+
Ile2
CAT
[ENA]
¡û
>WENV180544483
OCIQ01013611
[OCIQ] human gut metagenome; human gut
75
1
-
Ile2
CAT
[ENA]
¡û
>WENV180597704
OCPL01021963
[OCPL] human gut metagenome; ENVO:feces
361
437
+
Ile2
CAT
[ENA]
¡û
>WENV180633246
OCQZ01159724
[OCQZ] human gut metagenome; human gut
103
27
-
Ile2
CAT
[ENA]
¡û
>WENV180673263
OCVV011337810
[OCVV] gut metagenome; gut
159
83
-
Ile2
CAT
[ENA]
¡û
>WENV180673273
OCVV011337810
[OCVV] gut metagenome; gut
159
83
-
Ile2
CAT
[ENA]
¡û
>WENV180708135
ODFJ01000325
[ODFJ] human metagenome; G_DNA_Tongue dorsum
492
568
+
Ile2
CAT
[ENA]
¡û
>WENV180708368
ODFJ01001192
[ODFJ] human metagenome; G_DNA_Tongue dorsum
205
281
+
Ile2
CAT
[ENA]
¡û
>WENV180719407
ODGJ01001412
[ODGJ] human metagenome; G_DNA_Tongue dorsum
45
121
+
Ile2
CAT
[ENA]
¡û
>WENV180723996
ODGR01000007
[ODGR] human metagenome; G_DNA_Tongue dorsum
26553
26477
-
Ile2
CAT
[ENA]
¡û
>WENV180724152
ODGR01000121
[ODGR] human metagenome; G_DNA_Tongue dorsum
75
151
+
Ile2
CAT
[ENA]
¡û
>WENV180756996
ODHW01000005
[ODHW] human metagenome; G_DNA_Tongue dorsum
21671
21595
-
Ile2
CAT
[ENA]
¡û
>WENV180763472
ODIA01001151
[ODIA] human metagenome; G_DNA_Tongue dorsum
14186
14110
-
Ile2
CAT
[ENA]
¡û
>WENV180768241
ODIG01004068
[ODIG] human metagenome; G_DNA_Tongue dorsum
6800
6724
-
Ile2
CAT
[ENA]
¡û
>WENV180768602
ODIG01011304
[ODIG] human metagenome; G_DNA_Tongue dorsum
3163
3087
-
Ile2
CAT
[ENA]
¡û
>WENV180769520
ODIG01084766
[ODIG] human metagenome; G_DNA_Tongue dorsum
171
95
-
Ile2
CAT
[ENA]
¡û
>WENV180774079
ODIJ01007635
[ODIJ] human metagenome; G_DNA_Tongue dorsum
3390
3314
-
Ile2
CAT
[ENA]
¡û
>WENV180774736
ODIJ01063017
[ODIJ] human metagenome; G_DNA_Tongue dorsum
205
281
+
Ile2
CAT
[ENA]
¡û
>WENV180776363
ODIK01034394
[ODIK] human metagenome; G_DNA_Tongue dorsum
259
183
-
Ile2
CAT
[ENA]
¡û
>WENV180780185
ODIN01061501
[ODIN] human metagenome; G_DNA_Throat
365
289
-
Ile2
CAT
[ENA]
¡û
>WENV180783309
ODIQ01004420
[ODIQ] human metagenome; G_DNA_Tongue dorsum
39
115
+
Ile2
CAT
[ENA]
¡û
>WENV180790102
ODIT01003864
[ODIT] human metagenome; G_DNA_Tongue dorsum
3745
3669
-
Ile2
CAT
[ENA]
¡û
>WENV180791920
ODIW01000003
[ODIW] human metagenome; G_DNA_Tongue dorsum
112082
112006
-
Ile2
CAT
[ENA]
¡û
>WENV180795217
ODIZ01056614
[ODIZ] human metagenome; G_DNA_Tongue dorsum
59
135
+
Ile2
CAT
[ENA]
¡û
>WENV180803481
ODJE01174186
[ODJE] human metagenome; G_DNA_Tongue dorsum
19
95
+
Ile2
CAT
[ENA]
¡û
>WENV180806409
ODJH01017108
[ODJH] human metagenome; G_DNA_Tongue dorsum
304
380
+
Ile2
CAT
[ENA]
¡û
>WENV180809610
ODJK01028879
[ODJK] human metagenome; G_DNA_Subgingival plaque
197
273
+
Ile2
CAT
[ENA]
¡û
>WENV180816742
ODJP01050788
[ODJP] human metagenome; G_DNA_Tongue dorsum
77
1
-
Ile2
CAT
[ENA]
¡û
>WENV180820580
ODJR01012996
[ODJR] human metagenome; G_DNA_Tongue dorsum
77
1
-
Ile2
CAT
[ENA]
¡û
>WENV180821584
ODJS01021569
[ODJS] human metagenome; G_DNA_Tongue dorsum
546
622
+
Ile2
CAT
[ENA]
¡û
>WENV180831198
ODKB01055084
[ODKB] human metagenome; G_DNA_Tongue dorsum
77
1
-
Ile2
CAT
[ENA]
¡û
>WENV180854169
ODKX01001089
[ODKX] human metagenome; G_DNA_Tongue dorsum
1243
1319
+
Ile2
CAT
[ENA]
¡û
>WENV180856209
ODKZ01005889
[ODKZ] human metagenome; G_DNA_Tongue dorsum
126
202
+
Ile2
CAT
[ENA]
¡û
>WENV180858887
ODLC01052979
[ODLC] human metagenome; G_DNA_Tongue dorsum
40
116
+
Ile2
CAT
[ENA]
¡û
>WENV180862352
ODLE01087615
[ODLE] human metagenome; G_DNA_Tongue dorsum
218
142
-
Ile2
CAT
[ENA]
¡û
>WENV180864494
ODLH01049764
[ODLH] human metagenome; G_DNA_Tongue dorsum
253
177
-
Ile2
CAT
[ENA]
¡û
>WENV180866113
ODLJ01004729
[ODLJ] human metagenome; G_DNA_Tongue dorsum
844
920
+
Ile2
CAT
[ENA]
¡û
>WENV180880120
ODLZ01007683
[ODLZ] human metagenome; G_DNA_Tongue dorsum
46
122
+
Ile2
CAT
[ENA]
¡û
>WENV180882416
ODMC01000038
[ODMC] human metagenome; G_DNA_Tongue dorsum
116484
116408
-
Ile2
CAT
[ENA]
¡û
>WENV180882529
ODMC01000092
[ODMC] human metagenome; G_DNA_Tongue dorsum
67
143
+
Ile2
CAT
[ENA]
¡û
>WENV180890976
ODMO01030816
[ODMO] human metagenome; G_DNA_Tongue dorsum
351
427
+
Ile2
CAT
[ENA]
¡û
>WENV180895947
ODNI01000002
[ODNI] human metagenome; G_DNA_Tongue dorsum
77
1
-
Ile2
CAT
[ENA]
¡û
>WENV180900348
ODOJ01001256
[ODOJ] human metagenome; G_DNA_Tongue dorsum
14180
14104
-
Ile2
CAT
[ENA]
¡û
>WENV180901609
ODOK01000803
[ODOK] human metagenome; G_DNA_Tongue dorsum
1209
1285
+
Ile2
CAT
[ENA]
¡û
>WENV180917639
ODTD01057462
[ODTD] human metagenome; G_DNA_Tongue dorsum
101
177
+
Ile2
CAT
[ENA]
¡û
>WENV180920106
ODTH01001394
[ODTH] human metagenome; G_DNA_Tongue dorsum
972
1048
+
Ile2
CAT
[ENA]
¡û
>WENV180930830
ODTP01000432
[ODTP] human metagenome; G_DNA_Tongue dorsum
1516
1440
-
Ile2
CAT
[ENA]
¡û
>WENV180949073
ODUG01007597
[ODUG] human metagenome; G_DNA_Tongue dorsum
1147
1223
+
Ile2
CAT
[ENA]
¡û
>WENV180949538
ODUG01020485
[ODUG] human metagenome; G_DNA_Tongue dorsum
417
341
-
Ile2
CAT
[ENA]
¡û
>WENV180951663
ODUH01039276
[ODUH] human metagenome; G_DNA_Subgingival plaque
953
877
-
Ile2
CAT
[ENA]
¡û
>WENV180953319
ODUI01019993
[ODUI] human metagenome; G_DNA_Tongue dorsum
280
204
-
Ile2
CAT
[ENA]
¡û
>WENV180958974
ODUM01000008
[ODUM] human metagenome; G_DNA_Tongue dorsum
29654
29730
+
Ile2
CAT
[ENA]
¡û
>WENV180960064
ODUM01008660
[ODUM] human metagenome; G_DNA_Tongue dorsum
970
1046
+
Ile2
CAT
[ENA]
¡û
>WENV180967824
ODUT01003808
[ODUT] human metagenome; G_DNA_Tongue dorsum
6072
6148
+
Ile2
CAT
[ENA]
¡û
>WENV180985866
ODVJ01021464
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1200
1276
+
Ile2
CAT
[ENA]
¡û
>WENV180989250
ODVL01077838
[ODVL] human metagenome; G_DNA_Tongue dorsum
197
121
-
Ile2
CAT
[ENA]
¡û
>WENV180990219
ODVN01000607
[ODVN] human metagenome; G_DNA_Tongue dorsum
29720
29796
+
Ile2
CAT
[ENA]
¡û
>WENV180990424
ODVN01001342
[ODVN] human metagenome; G_DNA_Tongue dorsum
67
143
+
Ile2
CAT
[ENA]
¡û
>WENV181013079
ODWN01000003
[ODWN] human metagenome; G_DNA_Tongue dorsum
258001
258077
+
Ile2
CAT
[ENA]
¡û
>WENV181016441
ODWR01001081
[ODWR] human metagenome; G_DNA_Tongue dorsum
1020
1096
+
Ile2
CAT
[ENA]
¡û
>WENV181032488
ODXN01000071
[ODXN] human metagenome; G_DNA_Tongue dorsum
199
275
+
Ile2
CAT
[ENA]
¡û
>WENV181032917
ODXN01001230
[ODXN] human metagenome; G_DNA_Tongue dorsum
14489
14413
-
Ile2
CAT
[ENA]
¡û
>WENV181039495
ODXQ01025179
[ODXQ] human metagenome; G_DNA_Tongue dorsum
1183
1259
+
Ile2
CAT
[ENA]
¡û
>WENV181040580
ODXS01000227
[ODXS] human metagenome; G_DNA_Tongue dorsum
33067
32991
-
Ile2
CAT
[ENA]
¡û
>WENV181044839
ODXV01049299
[ODXV] human metagenome; G_DNA_Tongue dorsum
99
175
+
Ile2
CAT
[ENA]
¡û
>WENV181045687
ODXW01001022
[ODXW] human metagenome; G_DNA_Tongue dorsum
37
113
+
Ile2
CAT
[ENA]
¡û
>WENV181056880
ODYJ01045582
[ODYJ] human metagenome; G_DNA_Stool
457
533
+
Ile2
CAT
[ENA]
¡û
>WENV181057282
ODYL01000018
[ODYL] human metagenome; G_DNA_Tongue dorsum
14220
14144
-
Ile2
CAT
[ENA]
¡û
>WENV181060262
ODYM01083116
[ODYM] human metagenome; G_DNA_Tongue dorsum
137
61
-
Ile2
CAT
[ENA]
¡û
>WENV181068502
ODZZ01000173
[ODZZ] human metagenome; G_DNA_Tongue dorsum
24172
24096
-
Ile2
CAT
[ENA]
¡û
>WENV181073819
OEAO01001225
[OEAO] human metagenome; G_DNA_Tongue dorsum
17147
17071
-
Ile2
CAT
[ENA]
¡û
>WENV181075184
OEAO01082604
[OEAO] human metagenome; G_DNA_Tongue dorsum
173
97
-
Ile2
CAT
[ENA]
¡û
>WENV181085961
OEAY01000019
[OEAY] human metagenome; G_DNA_Tongue dorsum
168534
168458
-
Ile2
CAT
[ENA]
¡û
>WENV181094291
OEBY01000049
[OEBY] human metagenome; G_DNA_Tongue dorsum
109507
109431
-
Ile2
CAT
[ENA]
¡û
>WENV181094396
OEBY01000128
[OEBY] human metagenome; G_DNA_Tongue dorsum
47160
47236
+
Ile2
CAT
[ENA]
¡û
>WENV181096918
OECA01000898
[OECA] human metagenome; G_DNA_Tongue dorsum
14188
14112
-
Ile2
CAT
[ENA]
¡û
>WENV181101655
OECT01000127
[OECT] human metagenome; G_DNA_Tongue dorsum
844
920
+
Ile2
CAT
[ENA]
¡û
>WENV181102636
OECT01006220
[OECT] human metagenome; G_DNA_Tongue dorsum
4233
4157
-
Ile2
CAT
[ENA]
¡û
>WENV181105067
OEED01000884
[OEED] human metagenome; G_DNA_Tongue dorsum
2258
2182
-
Ile2
CAT
[ENA]
¡û
>WENV181111965
OEEL01000049
[OEEL] human metagenome; G_DNA_Tongue dorsum
24266
24342
+
Ile2
CAT
[ENA]
¡û
>WENV181112739
OEEL01002626
[OEEL] human metagenome; G_DNA_Tongue dorsum
4949
5025
+
Ile2
CAT
[ENA]
¡û
>WENV181115504
OEEO01112481
[OEEO] human metagenome; G_DNA_Supragingival plaque
140
216
+
Ile2
CAT
[ENA]
¡û
>WENV181140321
OEGN01104889
[OEGN] human metagenome; G_DNA_Tongue dorsum
285
361
+
Ile2
CAT
[ENA]
¡û
>WENV181141833
OEGT01026358
[OEGT] human metagenome; G_DNA_Throat
600
676
+
Ile2
CAT
[ENA]
¡û
>WENV181151522
OEHW01066785
[OEHW] human metagenome; G_DNA_Tongue dorsum
494
418
-
Ile2
CAT
[ENA]
¡û
>WENV181157607
OEIG01014145
[OEIG] human metagenome; G_DNA_Hard palate
1408
1332
-
Ile2
CAT
[ENA]
¡û
>WENV181691868
OGOZ01028585
[OGOZ] human gut metagenome; faeces
1220
1296
+
Ile2
CAT
[ENA]
¡û
>W141284413
JALU01000014
Bacillota
Mogibacterium timidum ATCC 33093 [JALU]
1230
1306
+
Met
CAT
[ENA]
¡û
>WENV182892219
OKSH01037333
[OKSH] human gut metagenome; faeces
45
121
+
Ile2
CAT
[ENA]
¡û
>W141291739
JATQ01000003
Bacillota
[Eubacterium] sulci ATCC 35585 [JATQ]
261101
261177
+
Met
CAT
[ENA]
¡û
>WENV183128458
OLNZ01007500
[OLNZ] human gut metagenome; faeces
508
584
+
Ile2
CAT
[ENA]
¡û
>WENV183191570
OLPR01015500
[OLPR] human gut metagenome; faeces
1287
1363
+
Ile2
CAT
[ENA]
¡û
>WENV183299081
OLSN01002305
[OLSN] human gut metagenome; faeces
13723
13797
+
Ile2
CAT
[ENA]
¡û
>WENV183704398
PDWI01000200
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29344
29420
+
Ile2
CAT
[ENA]
¡û
>WENV183707285
PDWI01007723
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9865
9941
+
Ile2
CAT
[ENA]
¡û
>WENV183707879
PDWI01011254
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9528
9452
-
Ile2
CAT
[ENA]
¡û
>WENV183708092
PDWI01012862
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
289
365
+
Met
CAT
[ENA]
¡û
>WENV170685577
LFRM01098648
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
11866
11790
-
Met
CAT
[ENA]
¡û
>C181147980
CP027228
Bacillota
Mogibacterium diversum CCUG 47132 [CP027228]
633192
633116
-
Met
CAT
-
¡û
>W1910229086
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
117920
117996
+
Met
CAT
[ENA]
¡û
>W1910373678
FUHN01000007
Bacillota
Mobilibacterium timonense Marseille-P3194 [FUHN]
355990
355914
-
Met
CAT
[ENA]
¡û
>W1810797818
QRMS01000002
Bacillota
Emergencia timonensis AM07-24 [QRMS]
566328
566252
-
Met
CAT
[ENA]
¡û
>C151090368
CP012068
Bacillota
Eubacterium sulci ATCC 35585 [CP012068]
833475
833551
+
Met
CAT
-
¡û
>W2010250043
CABIXY020000002
Bacillota
Eubacteriaceae bacterium [CABIXY]
464777
464853
+
Ile2
CAT
[ENA]
¡û
>W2010275625
CABKWE020000009
Bacillota
Emergencia timonensis [CABKWE]
1955704
1955628
-
Ile2
CAT
[ENA]
¡û
>W2010383062
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
117920
117996
+
Ile2
CAT
[ENA]
¡û
>W2010401551
FUHN01000007
Bacillota
Mobilibacterium timonense Marseille-P3194 [FUHN]
355990
355914
-
Ile2
CAT
[ENA]
¡û
>W2011823179
UGGN01000002
Bacillota
[Eubacterium] infirmum NCTC12940 [UGGN]
261749
261825
+
Ile2
CAT
[ENA]
¡û
>W2012155451
VUNB01000001
Bacillota
Clostridiales Family XIII bacterium RF-744-FAT-WT-3 [VUNB]
376459
376535
+
Ile2
CAT
[ENA]
¡û
>C231016046
AP025567
Bacillota
Emergencia timonensis CE91-St48 [AP025567]
1840098
1840174
+
Ile2
CAT
-
¡û
>C231016097
AP025568
Bacillota
Emergencia timonensis CE91-St49 [AP025568]
1840089
1840165
+
Ile2
CAT
-
¡û
>C231378396
CP097093
Bacillota
Mogibacterium diversum [CP097093]
898115
898039
-
Ile2
CAT
-
¡û
>W1511351220
JRNA01000009
Bacillota
Clostridiales bacterium S5-A14a [JRNA]
68309
68233
-
Met
CAT
[ENA]
¡û
>W121021711
AGWI01000014
Bacillota
[Eubacterium] infirmum F0142 [AGWI]
60944
61020
+
Met
CAT
[ENA]
¡û
>W121112626
ALNL01000044
Bacillota
Mogibacterium sp. CM50 [ALNL]
159448
159372
-
Met
CAT
[ENA]
¡û
>W1610501845
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1955704
1955628
-
Met
CAT
[ENA]
¡û
>W1610947634
LVAH01000003
Bacillota
Clostridiales bacterium Firm_02 [LVAH]
103701
103777
+
Met
CAT
[ENA]
¡û
>W1710495315
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1955704
1955628
-
Met
CAT
[ENA]
¡û
>W1710560478
FONK01000008
Bacillota
Peptostreptococcaceae bacterium pGA-8 [FONK]
19407
19483
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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