This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172910 (102 seq.)
>W131037620
AMFF01000449
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
14900
14976
+
Arg
CCT
[ENA]
¡û
>W131038465
AMGC01000288
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
9585
9661
+
Arg
CCT
[ENA]
¡û
>W1711138255
LVCQ01000028
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
23211
23287
+
Arg
CCT
[ENA]
¡û
>W131195166
ASSK01000034
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
3305
3229
-
Arg
CCT
[ENA]
¡û
>W1711372807
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
2357893
2357817
-
Arg
CCT
[ENA]
¡û
>C171026468
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
417024
417100
+
Arg
CCT
-
¡û
>C171026524
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
547550
547626
+
Arg
CCT
-
¡û
>C171026582
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
1408938
1409014
+
Arg
CCT
-
¡û
>C171026638
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
1406024
1406100
+
Arg
CCT
-
¡û
>C171026694
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1243572
1243648
+
Arg
CCT
-
¡û
>C171026753
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1370690
1370766
+
Arg
CCT
-
¡û
>C171026809
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1370949
1371025
+
Arg
CCT
-
¡û
>C171026872
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
2032110
2032186
+
Arg
CCT
-
¡û
>C171026959
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1349906
1349830
-
Arg
CCT
-
¡û
>C171026992
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2584493
2584569
+
Arg
CCT
-
¡û
>C171027033
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1370755
1370831
+
Arg
CCT
-
¡û
>C171027096
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
2032115
2032191
+
Arg
CCT
-
¡û
>C171027152
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2032114
2032190
+
Arg
CCT
-
¡û
>C171027216
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2585573
2585649
+
Arg
CCT
-
¡û
>WENV180689265
OCZA010692928
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117
43
-
Arg
CCT
[ENA]
¡û
>W141221243
AZYQ02000224
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
6984
6908
-
Arg
CCT
[ENA]
¡û
>WENV170119787
CENJ01164000
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
530
457
-
Arg
CCT
[ENA]
¡û
>WENV170135224
CENU01187825
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
463
390
-
Arg
CCT
[ENA]
¡û
>WENV170859006
MDTB01030285
[MDTB] marine metagenome; seawater
1849
1773
-
Arg
CCT
[ENA]
¡û
>WENV170861655
MDTB01067523
[MDTB] marine metagenome; seawater
1815
1742
-
Arg
CCT
[ENA]
¡û
>WENV170864742
MDTB01109815
[MDTB] marine metagenome; seawater
5629
5556
-
Arg
CCT
[ENA]
¡û
>C191116631
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
2445366
2445442
+
Arg
CCT
-
¡û
>W1911652757
QBEV01000456
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
313
389
+
Arg
CCT
[ENA]
¡û
>W1810054378
PDFD01000086
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
15450
15526
+
Arg
CCT
[ENA]
¡û
>C151087004
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
602280
602204
-
Arg
CCT
[Ensembl]
¡û
>C151095302
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2584490
2584566
+
Arg
CCT
-
¡û
>W2010316279
CACKTD010000002
Gammaproteobacteria
Coxiellaceae bacterium [CACKTD]
27442
27369
-
Arg
CCT
[ENA]
¡û
>W2011236176
QBEV01000456
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
313
389
+
Arg
CCT
[ENA]
¡û
>C201075052
CP038811
Gammaproteobacteria
Piscirickettsia salmonis Psal-001 [CP038811]
2391886
2391962
+
Arg
CCT
-
¡û
>C201075369
CP038876
Gammaproteobacteria
Piscirickettsia salmonis Psal-002 [CP038876]
2416240
2416316
+
Arg
CCT
-
¡û
>C201075458
CP038881
Gammaproteobacteria
Piscirickettsia salmonis Psal-003 [CP038881]
888920
888844
-
Arg
CCT
-
¡û
>C201075514
CP038886
Gammaproteobacteria
Piscirickettsia salmonis Psal-004 [CP038886]
888934
888858
-
Arg
CCT
-
¡û
>C201075539
CP038891
Gammaproteobacteria
Piscirickettsia salmonis Psal-005 [CP038891]
2438756
2438832
+
Arg
CCT
-
¡û
>C201075624
CP038893
Gammaproteobacteria
Piscirickettsia salmonis Psal-006a [CP038893]
774744
774668
-
Arg
CCT
-
¡û
>C201075685
CP038898
Gammaproteobacteria
Piscirickettsia salmonis Psal-006b [CP038898]
609518
609442
-
Arg
CCT
-
¡û
>C201075739
CP038904
Gammaproteobacteria
Piscirickettsia salmonis Psal-008 [CP038904]
603959
603883
-
Arg
CCT
-
¡û
>C201075760
CP038908
Gammaproteobacteria
Piscirickettsia salmonis Psal-009 [CP038908]
2606380
2606456
+
Arg
CCT
-
¡û
>C201075848
CP038913
Gammaproteobacteria
Piscirickettsia salmonis Psal-010a [CP038913]
893911
893835
-
Arg
CCT
-
¡û
>C201075907
CP038918
Gammaproteobacteria
Piscirickettsia salmonis Psal-010b [CP038918]
609433
609357
-
Arg
CCT
-
¡û
>C201075927
CP038923
Gammaproteobacteria
Piscirickettsia salmonis Psal-011 [CP038923]
2425464
2425540
+
Arg
CCT
-
¡û
>C201076015
CP038927
Gammaproteobacteria
Piscirickettsia salmonis Psal-013 [CP038927]
603970
603894
-
Arg
CCT
-
¡û
>C201076037
CP038932
Gammaproteobacteria
Piscirickettsia salmonis Psal-025 [CP038932]
2433021
2433097
+
Arg
CCT
-
¡û
>C201076124
CP038937
Gammaproteobacteria
Piscirickettsia salmonis Psal-026 [CP038937]
898078
898002
-
Arg
CCT
-
¡û
>C201076147
CP038942
Gammaproteobacteria
Piscirickettsia salmonis Psal-027 [CP038942]
2416249
2416325
+
Arg
CCT
-
¡û
>C201076204
CP038947
Gammaproteobacteria
Piscirickettsia salmonis Psal-028 [CP038947]
2416053
2416129
+
Arg
CCT
-
¡û
>C201076260
CP038952
Gammaproteobacteria
Piscirickettsia salmonis Psal-040 [CP038952]
2427210
2427286
+
Arg
CCT
-
¡û
>C201076316
CP038957
Gammaproteobacteria
Piscirickettsia salmonis Psal-041 [CP038957]
2416168
2416244
+
Arg
CCT
-
¡û
>C201076372
CP038962
Gammaproteobacteria
Piscirickettsia salmonis Psal-051 [CP038962]
2411310
2411386
+
Arg
CCT
-
¡û
>C201076427
CP038967
Gammaproteobacteria
Piscirickettsia salmonis Psal-068 [CP038967]
2389562
2389638
+
Arg
CCT
-
¡û
>C201076485
CP038972
Gammaproteobacteria
Piscirickettsia salmonis Psal-069 [CP038972]
2411631
2411707
+
Arg
CCT
-
¡û
>C201076796
CP039032
Gammaproteobacteria
Piscirickettsia salmonis Psal-070 [CP039032]
893912
893836
-
Arg
CCT
-
¡û
>C201076820
CP039035
Gammaproteobacteria
Piscirickettsia salmonis Psal-071 [CP039035]
2422708
2422784
+
Arg
CCT
-
¡û
>C201076876
CP039040
Gammaproteobacteria
Piscirickettsia salmonis Psal-072 [CP039040]
2409016
2409092
+
Arg
CCT
-
¡û
>C201076967
CP039046
Gammaproteobacteria
Piscirickettsia salmonis Psal-073 [CP039046]
604072
603996
-
Arg
CCT
-
¡û
>C201077023
CP039050
Gammaproteobacteria
Piscirickettsia salmonis Psal-081 [CP039050]
601653
601577
-
Arg
CCT
-
¡û
>C201077077
CP039055
Gammaproteobacteria
Piscirickettsia salmonis Psal-098 [CP039055]
608955
608879
-
Arg
CCT
-
¡û
>C201077131
CP039060
Gammaproteobacteria
Piscirickettsia salmonis Psal-099 [CP039060]
608955
608879
-
Arg
CCT
-
¡û
>C201077182
CP039065
Gammaproteobacteria
Piscirickettsia salmonis Psal-107 [CP039065]
714244
714168
-
Arg
CCT
-
¡û
>C201077243
CP039070
Gammaproteobacteria
Piscirickettsia salmonis Psal-108 [CP039070]
608941
608865
-
Arg
CCT
-
¡û
>C201077299
CP039076
Gammaproteobacteria
Piscirickettsia salmonis Psal-109 [CP039076]
608929
608853
-
Arg
CCT
-
¡û
>C201077355
CP039081
Gammaproteobacteria
Piscirickettsia salmonis Psal-110 [CP039081]
602483
602407
-
Arg
CCT
-
¡û
>C201077411
CP039087
Gammaproteobacteria
Piscirickettsia salmonis Psal-111 [CP039087]
609241
609165
-
Arg
CCT
-
¡û
>C201077467
CP039092
Gammaproteobacteria
Piscirickettsia salmonis Psal-114 [CP039092]
608927
608851
-
Arg
CCT
-
¡û
>C201077523
CP039097
Gammaproteobacteria
Piscirickettsia salmonis Psal-117 [CP039097]
608950
608874
-
Arg
CCT
-
¡û
>C201077579
CP039102
Gammaproteobacteria
Piscirickettsia salmonis Psal-118 [CP039102]
608948
608872
-
Arg
CCT
-
¡û
>C201077635
CP039107
Gammaproteobacteria
Piscirickettsia salmonis Psal-134 [CP039107]
608941
608865
-
Arg
CCT
-
¡û
>C201077691
CP039112
Gammaproteobacteria
Piscirickettsia salmonis Psal-135 [CP039112]
608941
608865
-
Arg
CCT
-
¡û
>C201077881
CP039171
Gammaproteobacteria
Piscirickettsia salmonis Psal-138 [CP039171]
608941
608865
-
Arg
CCT
-
¡û
>C201077937
CP039176
Gammaproteobacteria
Piscirickettsia salmonis Psal-139 [CP039176]
608941
608865
-
Arg
CCT
-
¡û
>C201077988
CP039181
Gammaproteobacteria
Piscirickettsia salmonis Psal-158 [CP039181]
714269
714193
-
Arg
CCT
-
¡û
>C201078044
CP039186
Gammaproteobacteria
Piscirickettsia salmonis Psal-159 [CP039186]
714317
714241
-
Arg
CCT
-
¡û
>C201078100
CP039190
Gammaproteobacteria
Piscirickettsia salmonis Psal-160 [CP039190]
714196
714120
-
Arg
CCT
-
¡û
>C201078156
CP039195
Gammaproteobacteria
Piscirickettsia salmonis Psal-161 [CP039195]
714245
714169
-
Arg
CCT
-
¡û
>C201078212
CP039201
Gammaproteobacteria
Piscirickettsia salmonis Psal-163 [CP039201]
714219
714143
-
Arg
CCT
-
¡û
>C201078238
CP039204
Gammaproteobacteria
Piscirickettsia salmonis Psal-182 [CP039204]
2400692
2400768
+
Arg
CCT
-
¡û
>C201078294
CP039209
Gammaproteobacteria
Piscirickettsia salmonis Psal-103 [CP039209]
2411024
2411100
+
Arg
CCT
-
¡û
>C201078349
CP039214
Gammaproteobacteria
Piscirickettsia salmonis Psal-104a [CP039214]
2416515
2416591
+
Arg
CCT
-
¡û
>C201081627
CP039868
Gammaproteobacteria
Piscirickettsia salmonis Psal-113 [CP039868]
608941
608865
-
Arg
CCT
-
¡û
>C201211633
CP048052
Gammaproteobacteria
Piscirickettsia salmonis Ps-11091B [CP048052]
2584808
2584884
+
Arg
CCT
-
¡û
>C201211684
CP048056
Gammaproteobacteria
Piscirickettsia salmonis Ps-8942B [CP048056]
2615851
2615927
+
Arg
CCT
-
¡û
>C201211737
CP048066
Gammaproteobacteria
Piscirickettsia salmonis Ps-8079A [CP048066]
2437415
2437491
+
Arg
CCT
-
¡û
>C201244481
CP050938
Gammaproteobacteria
Piscirickettsia salmonis Ps-2192A [CP050938]
796924
796848
-
Arg
CCT
-
¡û
>C211144017
CP061189
Gammaproteobacteria
Piscirickettsia salmonis Ps12201A [CP061189]
829153
829077
-
Arg
CCT
-
¡û
>C231045987
CP040166
Gammaproteobacteria
Piscirickettsia salmonis Psal-104b [CP040166]
602550
602474
-
Arg
CCT
-
¡û
>C241047775
CP039219
Gammaproteobacteria
Piscirickettsia salmonis NVI 5692 [CP039219]
697964
697888
-
Arg
CCT
-
¡û
>C241047796
CP039227
Gammaproteobacteria
Piscirickettsia salmonis SR1 [CP039227]
2894915
2894991
+
Arg
CCT
-
¡û
>C241047885
CP039234
Gammaproteobacteria
Piscirickettsia salmonis BI1 [CP039234]
708746
708670
-
Arg
CCT
-
¡û
>C241047907
CP039240
Gammaproteobacteria
Piscirickettsia salmonis MR5 [CP039240]
2903578
2903654
+
Arg
CCT
-
¡û
>W1511336319
JRAD02000043
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
6990
6914
-
Arg
CCT
[ENA]
¡û
>W1511337049
JRAV02000036
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
6972
6896
-
Arg
CCT
[ENA]
¡û
>W1511346419
JRHD01000083
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
15103
15179
+
Arg
CCT
[ENA]
¡û
>W1511346877
JRHP01000103
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
3431
3355
-
Arg
CCT
[ENA]
¡û
>W1511657187
LELB01000225
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
6397
6321
-
Arg
CCT
[ENA]
¡û
>C161042033
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2348172
2348248
+
Arg
CCT
[Ensembl]
¡û
>C161062477
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2557195
2557271
+
Arg
CCT
-
¡û
>C161063144
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
2602470
2602546
+
Arg
CCT
-
¡û
>W1610949341
LVCQ01000028
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
23211
23287
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK