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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173617 (22 seq.)
>W1711407642
MGLA01000001
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYA1_FULL_44_17 [MGLA]
12060
12136
+
Val
CAC
[ENA]
¡û
>W1711407687
MGLB01000003
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYA2_FULL_45_28 [MGLB]
12083
12159
+
Val
CAC
[ENA]
¡û
>W1711407714
MGLC01000001
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYB1_FULL_44_29 [MGLC]
12082
12158
+
Val
CAC
[ENA]
¡û
>W1711407762
MGLD01000002
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYB2_FULL_44_18 [MGLD]
12042
12118
+
Val
CAC
[ENA]
¡û
>W1711407808
MGLE01000004
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYC1_FULL_44_16 [MGLE]
12074
12150
+
Val
CAC
[ENA]
¡û
>W1711407876
MGLF01000012
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYC2_FULL_44_13 [MGLF]
11963
12039
+
Val
CAC
[ENA]
¡û
>W1711407904
MGLG01000059
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYD1_FULL_42_10 [MGLG]
9182
9258
+
Val
CAC
[ENA]
¡û
>W1711407925
MGLH01000004
Unclassified
Candidatus Yanofskybacteria bacterium RIFOXYD1_FULL_44_17 [MGLH]
12049
12125
+
Val
CAC
[ENA]
¡û
>WENV180256513
OBEQ010826151
[OBEQ] groundwater metagenome; groundwater
427
502
+
Val
CAC
[ENA]
¡û
>WENV180268255
OBEQ011945849
[OBEQ] groundwater metagenome; groundwater
377
302
-
Val
CAC
[ENA]
¡û
>WENV183665180
ORJL010447902
[ORJL] groundwater metagenome; groundwater
415
339
-
Val
CAC
[ENA]
¡û
>WENV183694228
ORMF012205548
[ORMF] groundwater metagenome; groundwater
411
487
+
Val
CAC
[ENA]
¡û
>W1910723620
MGJC01000011
Unclassified
Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_27 [MGJC]
9313
9389
+
Val
CAC
[ENA]
¡û
>W1910724547
MGKF01000019
Unclassified
Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_41_33 [MGKF]
9326
9402
+
Val
CAC
[ENA]
¡û
>W2010857047
MGJC01000011
Unclassified
Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_27 [MGJC]
9313
9389
+
Val
CAC
[ENA]
¡û
>W2010857974
MGKF01000019
Unclassified
Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_41_33 [MGKF]
9326
9402
+
Val
CAC
[ENA]
¡û
>W1511603574
LBXT01000003
Unclassified
Candidatus Yanofskybacteria bacterium GW2011_GWE1_40_10 bacterium GW2011_GWE1_40_10 [LBXT]
21976
21900
-
Val
CAC
[ENA]
¡û
>W1511603774
LBXZ01000009
Unclassified
Candidatus Yanofskybacteria bacterium GW2011_GWE2_40_11 bacterium GW2011_GWE2_40_11 [LBXZ]
15439
15363
-
Val
CAC
[ENA]
¡û
>W1511606089
LCBA01000009
Unclassified
Candidatus Yanofskybacteria bacterium GW2011_GWA2_41_22 bacterium GW2011_GWA2_41_22 [LCBA]
7045
7121
+
Val
CAC
[ENA]
¡û
>W1511606982
LCCD01000052
Unclassified
Candidatus Jorgensenbacteria bacterium GW2011_GWF2_41_8 bacterium GW2011_GWF2_41_8 [LCCD]
7675
7751
+
Val
CAC
[ENA]
¡û
>W1511610522
LCGN01000009
Unclassified
Candidatus Yanofskybacteria bacterium GW2011_GWF2_43_596 bacterium GW2011_GWF2_43_596 [LCGN]
12086
12162
+
Val
CAC
[ENA]
¡û
>W1511611990
LCIK01000008
Unclassified
Candidatus Yanofskybacteria bacterium GW2011_GWF1_44_227 bacterium GW2011_GWF1_44_227 [LCIK]
12086
12162
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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