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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175420 (27 seq.)
>W1711769454
MVEC01000004
Bacteroidota
Spirosoma sp. 209 [MVEC]
120865
120789
-
Met
CAT
[ENA]
¡û
>C171030732
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
3566656
3566730
+
Met
CAT
-
¡û
>C171037545
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
6238253
6238177
-
Met
CAT
-
¡û
>C171104423
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
415107
415181
+
Met
CAT
-
¡û
>W141242797
CAIT01000009
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
847529
847455
-
Met
CAT
[ENA]
¡û
>WENV170983800
MWVV01094741
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
536
612
+
Met
CAT
[ENA]
¡û
>C181113134
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
5753248
5753174
-
Met
CAT
-
¡û
>W09109905
ABUR01000002
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
137759
137683
-
Met
CAT
[ENA]
¡û
>W1810364393
PVTE01000045
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
10398
10324
-
Met
CAT
[ENA]
¡û
>SRA1014263
SRR023845.65739
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>SRA1014278
SRR023845.68784
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>SRA1014901
SRR023845.373227
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
103
26
-
Met
CAT
[SRA]
>SRA1015060
SRR023845.445178
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>SRA1015160
SRR023845.481770
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>W2010468909
JAAGNZ010000002
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
1397656
1397582
-
Ile2
CAT
[ENA]
¡û
>W2011532742
SBLB01000001
Bacteroidota
Spirosoma sp. TY50 [SBLB]
1890741
1890815
+
Ile2
CAT
[ENA]
¡û
>W2011705637
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
439019
438945
-
Ile2
CAT
[ENA]
¡û
>W2012222079
WAEL01000001
Bacteroidota
Fibrella aestuarina JA25 [WAEL]
676575
676649
+
Ile2
CAT
[ENA]
¡û
>W2110517352
JAFMYV010000001
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
550380
550454
+
Ile2
CAT
[ENA]
¡û
>W2110517401
JAFMYW010000002
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
1099065
1099139
+
Ile2
CAT
[ENA]
¡û
>C201250747
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
2451462
2451536
+
Ile2
CAT
-
¡û
>C231263222
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
1645344
1645270
-
Ile2
CAT
-
¡û
>W2110772292
VFIA01000024
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
94109
94183
+
Ile2
CAT
[ENA]
¡û
>W2110772333
VFIC01000027
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
94083
94157
+
Ile2
CAT
[ENA]
¡û
>C241171834
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
2074297
2074371
+
Ile2
CAT
-
¡û
>C10111776
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7875147
7875071
-
Met
CAT
[Ensembl]
¡û
>W1710558189
FOLQ01000003
Bacteroidota
Spirosoma endophyticum [FOLQ]
551330
551254
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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