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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175557 (34 seq.)
>C025426
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
231452
231528
+
Arg
TCT
[Ensembl]
¡û
>WENV180242230
OBDI01143638
[OBDI] metagenome; diffuse fluid
105
181
+
Arg
TCT
[ENA]
¡û
>WENV180276973
OBHV01019660
[OBHV] metagenome; water
92
16
-
Arg
TCT
[ENA]
¡û
>WENV180299724
OBJC01098342
[OBJC] metagenome; water
80
4
-
Lys
TTT
[ENA]
¡û
>WENV180317050
OBKJ01010688
[OBKJ] metagenome; hydrothermal vent
452
528
+
Arg
TCT
[ENA]
¡û
>WENV180346183
OBLN01035588
[OBLN] sediment metagenome; sediment
801
877
+
Arg
TCT
[ENA]
¡û
>WENV180634371
OCRB01004421
[OCRB] metagenome; diffuse fluid
370
294
-
Arg
TCT
[ENA]
¡û
>WENV180647934
OCSI01027322
[OCSI] metagenome; diffuse fluid
287
211
-
Arg
TCT
[ENA]
¡û
>WENV181207451
OFAZ01000406
[OFAZ] metagenome; hydrothermal vent
5270
5194
-
Arg
TCT
[ENA]
¡û
>WENV181207990
OFBA01006225
[OFBA] metagenome; hydrothermal vent
466
542
+
Arg
TCT
[ENA]
¡û
>WENV181208439
OFBB01013016
[OFBB] metagenome; hydrothermal vent
159
83
-
Arg
TCT
[ENA]
¡û
>WENV181208729
OFBC01002707
[OFBC] metagenome; hydrothermal vent
1255
1179
-
Arg
TCT
[ENA]
¡û
>WENV181209069
OFBD01003904
[OFBD] metagenome; hydrothermal vent
1261
1337
+
Arg
TCT
[ENA]
¡û
>WENV181209540
OFBE01007854
[OFBE] metagenome; hydrothermal vent
603
527
-
Arg
TCT
[ENA]
¡û
>WENV181210580
OFBH01011959
[OFBH] metagenome; hydrothermal vent
284
208
-
Arg
TCT
[ENA]
¡û
>WENV181211251
OFBK01000290
[OFBK] metagenome; hydrothermal vent
683
759
+
Arg
TCT
[ENA]
¡û
>WENV181211938
OFBM01002058
[OFBM] metagenome; hydrothermal vent
378
302
-
Arg
TCT
[ENA]
¡û
>WENV181213055
OFBU01006830
[OFBU] metagenome; hydrothermal vent
982
906
-
Arg
TCT
[ENA]
¡û
>WENV181213600
OFBV01012207
[OFBV] metagenome; hydrothermal vent
550
474
-
Arg
TCT
[ENA]
¡û
>WENV181214334
OFBX01003234
[OFBX] metagenome; hydrothermal vent
22
98
+
Arg
TCT
[ENA]
¡û
>WENV181215196
OFBZ01007533
[OFBZ] metagenome; hydrothermal vent
844
768
-
Arg
TCT
[ENA]
¡û
>WENV181215843
OFCA01024211
[OFCA] metagenome; hydrothermal vent
113
189
+
Arg
TCT
[ENA]
¡û
>WENV181224041
OFDD01011136
[OFDD] metagenome; hydrothermal vent
313
237
-
Arg
TCT
[ENA]
¡û
>WENV181224712
OFDG01001850
[OFDG] metagenome; hydrothermal vent
631
707
+
Arg
TCT
[ENA]
¡û
>WENV181228292
OFDO01008418
[OFDO] metagenome; hydrothermal vent
428
352
-
Arg
TCT
[ENA]
¡û
>WENV170656574
JTFO01025838
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
4410
4486
+
Arg
TCT
[ENA]
¡û
>WENV170657842
JTFP01025582
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
2417
2341
-
Arg
TCT
[ENA]
¡û
>WENV170666827
JYMV01040967
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
9578
9502
-
Arg
TCT
[ENA]
¡û
>W09103237
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
412594
412518
-
Arg
TCT
[ENA]
¡û
>W2011751833
SZPX01000001
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
264213
264289
+
Arg
TCT
[ENA]
¡û
>C201092957
CP041166
Campylobacterota
Sulfurimonas sp. 1-1N [CP041166]
159324
159400
+
Arg
TCT
-
¡û
>C211052419
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
161524
161600
+
Arg
TCT
-
¡û
>C241040219
CP033720
Campylobacterota
Sulfurimonas sp. CVO [CP033720]
1702041
1701965
-
Arg
TCT
-
¡û
>C241081498
CP043617
Campylobacterota
Sulfurimonas lithotrophica GYSZ_1 [CP043617]
226396
226472
+
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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