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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175702 (49 seq.)
>W1711678526
MRUG01000025
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
113417
113341
-
Val
GAC
[ENA]
¡û
>W131159063
AQUT01000001
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
400912
400988
+
Val
GAC
[ENA]
¡û
>W131164148
ARAH01000022
Gammaproteobacteria
Teredinibacter turnerae T7902 [ARAH]
78262
78186
-
Val
GAC
[ENA]
¡û
>W131166986
ARCX01000051
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
344821
344745
-
Val
GAC
[ENA]
¡û
>W131179277
ARMG01000016
Gammaproteobacteria
Teredinibacter turnerae T8402 [ARMG]
139504
139580
+
Val
GAC
[ENA]
¡û
>W131179317
ARMH01000045
Gammaproteobacteria
Teredinibacter turnerae T8412 [ARMH]
447
371
-
Val
GAC
[ENA]
¡û
>W131219168
ATYI01000009
Gammaproteobacteria
Teredinibacter turnerae T8415 [ATYI]
21157
21081
-
Val
GAC
[ENA]
¡û
>W131228614
AUGB01000047
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
549
473
-
Val
GAC
[ENA]
¡û
>WENV180296203
OBJA01000056
[OBJA] soil metagenome; sediment, water from around vicinity
49069
49145
+
Val
GAC
[ENA]
¡û
>W141093352
AVBC01000055
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
69613
69689
+
Val
GAC
[ENA]
¡û
>WENV170014554
AYRH01006798
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
245
321
+
Val
GAC
[ENA]
¡û
>W141565070
JIBG01000010
Gammaproteobacteria
Teredinibacter turnerae 1133Y.S.0a.04 [JIBG]
31286
31362
+
Val
GAC
[ENA]
¡û
>W1830012175
QGOK01000011
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
115375
115451
+
Val
GAC
[ENA]
¡û
>W1830012305
QHJF01000006
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
72444
72368
-
Val
GAC
[ENA]
¡û
>C151083054
CP011477
Gammaproteobacteria
Spongiibacter sp. IMCC21906 [CP011477]
2540078
2540002
-
Val
GAC
[Ensembl]
¡û
>W2010316800
CACNSR010000008
Gammaproteobacteria
Halieaceae bacterium [CACNSR]
1359
1435
+
Val
GAC
[ENA]
¡û
>W2010901657
MRUH01000123
Gammaproteobacteria
Teredinibacter waterburyi Bs02 [MRUH]
142947
142871
-
Val
GAC
[ENA]
¡û
>W2011373859
RBIO01000001
Gammaproteobacteria
Alteromonadaceae bacterium 2052S.S.stab0a.01 [RBIO]
1111033
1110957
-
Val
GAC
[ENA]
¡û
>W2011482879
RQXV01000002
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
67133
67209
+
Val
GAC
[ENA]
¡û
>W2011670842
SPLL01000002
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
328494
328570
+
Val
GAC
[ENA]
¡û
>W2012042448
VISH01000002
Gammaproteobacteria
Alteromonadaceae bacterium 2753L.S.0a.02 [VISH]
1854372
1854448
+
Val
GAC
[ENA]
¡û
>W2110496098
JAFFZO010000054
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
6887
6963
+
Val
GAC
[ENA]
¡û
>W2110496147
JAFFZP010000023
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
50669
50745
+
Val
GAC
[ENA]
¡û
>W2110683919
JAILYN010000010
Gammaproteobacteria
Marinobacterium sp. CAU 1594 [JAILYN]
77346
77422
+
Val
GAC
[ENA]
¡û
>C211000197
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
2830134
2830058
-
Val
GAC
-
¡û
>C211128755
CP060084
Gammaproteobacteria
Teredinibacter haidensis Bs08 [CP060084]
2123649
2123725
+
Val
GAC
-
¡û
>C213002025
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
1366730
1366806
+
Val
GAC
-
¡û
>C231011502
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
2893760
2893684
-
Val
GAC
-
¡û
>C231365298
CP096016
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12582 [CP096016]
2186525
2186449
-
Val
GAC
-
¡û
>C231426235
CP100390
Gammaproteobacteria
Alkalimarinus sp. A2M4 [CP100390]
1700337
1700413
+
Val
GAC
-
¡û
>C231569405
CP115811
Gammaproteobacteria
Marinobacter alkaliphilus JY28 [CP115811]
1990727
1990651
-
Val
GAC
-
¡û
>C241010988
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
648813
648737
-
Val
GAC
-
¡û
>C241153790
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
1747553
1747629
+
Val
GAC
-
¡û
>C241153791
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
1747645
1747721
+
Val
GAC
-
¡û
>W2130001345
BMLJ01000005
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
177793
177869
+
Val
GAC
[ENA]
¡û
>W2130026421
JAEMNX010000002
Gammaproteobacteria
Marinomonas sp. C1424 [JAEMNX]
95350
95274
-
Val
GAC
[ENA]
¡û
>W2130034017
JAGSSV010000001
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
1457
1381
-
Val
GAC
[ENA]
¡û
>W2130043099
LJYU01000034
Gammaproteobacteria
Neptunomonas qingdaonensis P10-2-4 [LJYU]
18725
18801
+
Val
GAC
[ENA]
¡û
>C10113874
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
1473375
1473451
+
Val
GAC
[Ensembl]
¡û
>W1511564144
LADM01000017
Gammaproteobacteria
Gammaproteobacteria bacterium BRH_c0 [LADM]
37610
37534
-
Val
GAC
[ENA]
¡û
>W1511573602
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
4037494
4037570
+
Val
GAC
[ENA]
¡û
>W1511573624
LANC01000006
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
107917
107993
+
Val
GAC
[ENA]
¡û
>W1630011956
LJSI01000021
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
272813
272889
+
Val
GAC
[ENA]
¡û
>W1730009791
FOOU01000003
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
193439
193515
+
Val
GAC
[ENA]
¡û
>W1730010680
FTOE01000005
Gammaproteobacteria
Neptunomonas antarctica [FTOE]
272859
272935
+
Val
GAC
[ENA]
¡û
>W1730014397
LJSI01000021
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
272813
272889
+
Val
GAC
[ENA]
¡û
>W1710551404
FOGB01000003
Gammaproteobacteria
Amphritea atlantica [FOGB]
327343
327267
-
Val
GAC
[ENA]
¡û
>W133004136
ASZJ01000130
Gammaproteobacteria
Osedax symbiont Rs1 [ASZJ]
11627
11703
+
Val
GAC
[ENA]
¡û
>W133004751
AUGR01000011
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
29415
29339
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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