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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175714 (45 seq.)
>WENV180095872
MTBK01094905
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
267
341
+
Asp
GTC
[ENA]
¡û
>WENV180296745
OBJA01002230
[OBJA] soil metagenome; sediment, water from around vicinity
11308
11382
+
Asp
GTC
[ENA]
¡û
>WENV180296746
OBJA01002230
[OBJA] soil metagenome; sediment, water from around vicinity
11453
11527
+
Asp
GTC
[ENA]
¡û
>WENV183512397
OMKS01000407
[OMKS] sediment metagenome; hot spring sediment
40031
40105
+
Asp
GTC
[ENA]
¡û
>WENV183709089
PDWI01023584
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4986
4912
-
Asp
GTC
[ENA]
¡û
>WENV183709090
PDWI01023584
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4879
4805
-
Asp
GTC
[ENA]
¡û
>WENV170017842
BARU01031993
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
169
93
-
Asp
GTC
[ENA]
¡û
>WENV170612074
FUWD012496526
[FUWD] metagenome; unknown
162
86
-
Asp
GTC
[ENA]
¡û
>WENV170718373
LSQX01073010
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
876
952
+
Asp
GTC
[ENA]
¡û
>WENV170718540
LSQX01080623
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
26159
26235
+
Asp
GTC
[ENA]
¡û
>WENV170725841
LSQX01358866
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
38000
38076
+
Asp
GTC
[ENA]
¡û
>WENV170968210
MTKW01007107
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6312
6236
-
Asp
GTC
[ENA]
¡û
>W1911748582
QWET01000002
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
87425
87351
-
Asp
GTC
[ENA]
¡û
>W1911748600
QWET01000012
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
97408
97334
-
Asp
GTC
[ENA]
¡û
>C151024021
CP007451
Bacteroidota
Draconibacterium orientale FH5 [CP007451]
4085826
4085900
+
Asp
GTC
[Ensembl]
¡û
>C151024022
CP007451
Bacteroidota
Draconibacterium orientale FH5 [CP007451]
4085940
4086016
+
Asp
GTC
[Ensembl]
¡û
>SRA1031160
SRR035087.381953
454 Sequencing (SRP001808)
246
170
-
Asp
GTC
[SRA]
>SRA1035849
SRR035089.387885
454 Sequencing (SRP001810)
260
184
-
Asp
GTC
[SRA]
>W2011317511
QWET01000002
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
87425
87351
-
Asp
GTC
[ENA]
¡û
>W2011317529
QWET01000012
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
97408
97334
-
Asp
GTC
[ENA]
¡û
>W2011603690
SJCO01000003
Bacteroidota
Prolixibacteraceae bacterium JC036 [SJCO]
215644
215720
+
Asp
GTC
[ENA]
¡û
>W2011603691
SJCO01000003
Bacteroidota
Prolixibacteraceae bacterium JC036 [SJCO]
215860
215934
+
Asp
GTC
[ENA]
¡û
>W2011647754
SNWI01000007
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
130456
130382
-
Asp
GTC
[ENA]
¡û
>W2011647755
SNWI01000007
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
130308
130234
-
Asp
GTC
[ENA]
¡û
>W2011647756
SNWI01000007
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
130058
129984
-
Asp
GTC
[ENA]
¡û
>W2011648422
SNWV01000019
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
130456
130382
-
Asp
GTC
[ENA]
¡û
>W2011648423
SNWV01000019
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
130308
130234
-
Asp
GTC
[ENA]
¡û
>W2011648424
SNWV01000019
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
130058
129984
-
Asp
GTC
[ENA]
¡û
>SRA1048407
SRR035094.166449
454 Sequencing (SRP001815)
63
139
+
Asp
GTC
[SRA]
>W2012506943
WXUA01000001
Bacteroidota
Maribellus sp. GM1-28 [WXUA]
92623
92549
-
Asp
GTC
[ENA]
¡û
>W2012506944
WXUA01000001
Bacteroidota
Maribellus sp. GM1-28 [WXUA]
92512
92438
-
Asp
GTC
[ENA]
¡û
>W2012506969
WXUB01000001
Bacteroidota
Maribellus sp. Y2-1-60 [WXUB]
1611488
1611562
+
Asp
GTC
[ENA]
¡û
>W2012506970
WXUB01000001
Bacteroidota
Maribellus sp. Y2-1-60 [WXUB]
1611599
1611673
+
Asp
GTC
[ENA]
¡û
>C201215264
CP048409
Bacteroidota
Draconibacterium sp. M1 [CP048409]
2372336
2372410
+
Asp
GTC
-
¡û
>C201215265
CP048409
Bacteroidota
Draconibacterium sp. M1 [CP048409]
2372448
2372522
+
Asp
GTC
-
¡û
>C241109051
CP046401
Bacteroidota
Maribellus comscasis WC007 [CP046401]
5382820
5382894
+
Asp
GTC
-
¡û
>C241109052
CP046401
Bacteroidota
Maribellus comscasis WC007 [CP046401]
5382923
5382997
+
Asp
GTC
-
¡û
>W1511346383
JRHC01000007
Bacteroidota
Draconibacterium sediminis JN14CK-3 [JRHC]
631
557
-
Asp
GTC
[ENA]
¡û
>W1511346384
JRHC01000007
Bacteroidota
Draconibacterium sediminis JN14CK-3 [JRHC]
516
440
-
Asp
GTC
[ENA]
¡û
>W1710553592
FOHT01000001
Bacteroidota
Draconibacterium orientale [FOHT]
239349
239275
-
Asp
GTC
[ENA]
¡û
>W1710553593
FOHT01000001
Bacteroidota
Draconibacterium orientale [FOHT]
239233
239157
-
Asp
GTC
[ENA]
¡û
>W1710561088
FONW01000008
Bacteroidota
Sunxiuqinia elliptica [FONW]
156011
155937
-
Asp
GTC
[ENA]
¡û
>W1710561089
FONW01000008
Bacteroidota
Sunxiuqinia elliptica [FONW]
155863
155787
-
Asp
GTC
[ENA]
¡û
>W1710561090
FONW01000008
Bacteroidota
Sunxiuqinia elliptica [FONW]
155613
155537
-
Asp
GTC
[ENA]
¡û
>W1710583058
FQUM01000003
Bacteroidota
Mariniphaga anaerophila [FQUM]
168517
168593
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK