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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177470 (15 seq.)
>WENV180013168
FMSI01051875
[FMSI] soil metagenome; Soil
47
122
+
Met
CAT
[ENA]
¡û
>WENV180014065
FPIC01040450
[FPIC] soil metagenome; Soil
77
4
-
Met
CAT
[ENA]
¡û
>WENV180037381
FVAA010978691
[FVAA] soil metagenome; Soil
203
278
+
Met
CAT
[ENA]
¡û
>WENV181222956
OFDC01000832
[OFDC] hot springs metagenome; Water
14429
14354
-
Met
CAT
[ENA]
¡û
>WENV181404420
OGCA01002460
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
912
838
-
Met
CAT
[ENA]
¡û
>WENV181404586
OGCA01019131
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
263
337
+
Met
CAT
[ENA]
¡û
>WENV181409061
OGCH01042381
[OGCH] hot springs metagenome; hot springs
131
204
+
Met
CAT
[ENA]
¡û
>WENV170574039
FLYM01000428
[FLYM] hot springs metagenome; Sediment
8891
8966
+
Met
CAT
[ENA]
¡û
>C141011675
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
507370
507444
+
Met
CAT
-
¡û
>W1911493369
OBEN01000008
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
5624
5697
+
Met
CAT
[ENA]
¡û
>W2011154320
OBEN01000008
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
5624
5697
+
Met
CAT
[ENA]
¡û
>C211344117
CP076323
Aquificota
Hydrogenobacter thermophilus [CP076323]
999161
999087
-
Met
CAT
-
¡û
>C211344150
CP076324
Aquificota
Aquificae bacterium [CP076324]
1610555
1610628
+
Met
CAT
-
¡û
>C10107870
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
1338834
1338758
-
Met
CAT
-
¡û
>C11111343
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
1338692
1338616
-
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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