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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177901 (69 seq.)
>W1710995812
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
316455
316381
-
Asn
GTT
[ENA]
¡û
>W1711059954
LRXL01000026
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
696715
696641
-
Asn
GTT
[ENA]
¡û
>W1711356773
MDGP01000001
Bacteroidota
Roseivirga sp. 4D4 4D4 [MDGP]
4102577
4102503
-
Asn
GTT
[ENA]
¡û
>W131220952
AUAA01000010
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
115455
115531
+
Asn
GTT
[ENA]
¡û
>w015423
AAPD01000001
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
703813
703891
+
Asn
GTT
[ENA]
¡û
>w012569
AAMP01000001
Bacteroidota
Croceibacter atlanticus HTCC2559 [AAMP]
904508
904430
-
Asn
GTT
[ENA]
¡û
>WENV180104913
OAPC01177887
[OAPC] marine metagenome; na
5
79
+
Asn
GTT
[ENA]
¢þ
>WENV180383558
OBOV01000519
[OBOV] marine metagenome; ENV:00002010
2205
2279
+
Asn
GTT
[ENA]
¢þ
>WENV180396464
OBPV01006779
[OBPV] marine metagenome; ENVO:00002010
631
705
+
Asn
GTT
[ENA]
¢þ
>WENV180397713
OBPZ01000842
[OBPZ] marine metagenome; ENVO:00002010
2288
2214
-
Asn
GTT
[ENA]
¢þ
>WENV180583461
OCNB01075135
[OCNB] metagenome; diffuse fluid
69
143
+
Asn
GTT
[ENA]
¢þ
>WENV180590466
OCOT01027159
[OCOT] marine metagenome; ENVO:00002010
455
381
-
Asn
GTT
[ENA]
¢þ
>WENV181324479
OFLE01024271
[OFLE] marine metagenome; sea ice
257
331
+
Asn
GTT
[ENA]
¢þ
>WENV181392930
OFRX01018203
[OFRX] seawater metagenome; seawater
664
590
-
Asn
GTT
[ENA]
¢þ
>WENV182559726
OJDQ01001865
[OJDQ] seawater metagenome; Sea water
4867
4941
+
Asn
GTT
[ENA]
¢þ
>WENV182562939
OJEA01013879
[OJEA] seawater metagenome; Sea water
233
159
-
Asn
GTT
[ENA]
¢þ
>WENV182564528
OJEF01000863
[OJEF] seawater metagenome; Sea water
9405
9479
+
Asn
GTT
[ENA]
¢þ
>WENV182565428
OJEH01004934
[OJEH] seawater metagenome; Sea water
800
874
+
Asn
GTT
[ENA]
¢þ
>WENV182572205
OJFL01001157
[OJFL] seawater metagenome; Sea water
3862
3788
-
Asn
GTT
[ENA]
¢þ
>WENV182573063
OJFP01000039
[OJFP] seawater metagenome; Sea water
21280
21354
+
Asn
GTT
[ENA]
¢þ
>WENV182580130
OJGU01005167
[OJGU] seawater metagenome; Sea water
2057
1983
-
Asn
GTT
[ENA]
¢þ
>WENV182584567
OJHG01001840
[OJHG] seawater metagenome; Sea water
2248
2322
+
Asn
GTT
[ENA]
¢þ
>WENV182585710
OJHI01001500
[OJHI] seawater metagenome; Sea water
3170
3096
-
Asn
GTT
[ENA]
¢þ
>WENV182586123
OJHJ01002779
[OJHJ] seawater metagenome; Sea water
2310
2236
-
Asn
GTT
[ENA]
¢þ
>WENV183059091
OLHS01003871
[OLHS] seawater metagenome; Sea water
892
966
+
Asn
GTT
[ENA]
¢þ
>WENV183615910
OOEC01003349
[OOEC] marine metagenome; sea ice
762
836
+
Asn
GTT
[ENA]
¢þ
>WENV183616986
OOEE01022290
[OOEE] marine metagenome; sea ice
463
389
-
Asn
GTT
[ENA]
¢þ
>WENV183618937
OOFP01005305
[OOFP] marine metagenome; seawater
526
600
+
Asn
GTT
[ENA]
¢þ
>WENV183619337
OOFQ01001485
[OOFQ] marine metagenome; seawater
2606
2680
+
Asn
GTT
[ENA]
¢þ
>WENV183621250
OOFT01030983
[OOFT] marine metagenome; sea ice
478
404
-
Asn
GTT
[ENA]
¢þ
>WENV183621634
OOFU01020349
[OOFU] marine metagenome; sea ice
234
308
+
Asn
GTT
[ENA]
¢þ
>WENV183624501
OOGD01020927
[OOGD] marine metagenome; sea ice
692
766
+
Asn
GTT
[ENA]
¢þ
>WENV183628857
OOGO01042291
[OOGO] marine metagenome; sea ice
224
150
-
Asn
GTT
[ENA]
¢þ
>WENV183706062
PDWI01003017
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
399
473
+
Asn
GTT
[ENA]
¢þ
>WENV183707321
PDWI01007833
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2309
2383
+
Asn
GTT
[ENA]
¢þ
>WENV183707322
PDWI01007833
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2488
2562
+
Asn
GTT
[ENA]
¢þ
>WENV183709110
PDWI01023994
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
73
147
+
Asn
GTT
[ENA]
¢þ
>WENV183710867
PDWI01055094
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3433
3507
+
Asn
GTT
[ENA]
¢þ
>WENV183711525
PDWI01072042
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9
83
+
Asn
GTT
[ENA]
¢þ
>WENV183713640
PDWI01146371
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1555
1629
+
Asn
GTT
[ENA]
¢þ
>WENV183714247
PDWI01175072
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1370
1444
+
Asn
GTT
[ENA]
¢þ
>WENV183718597
PDWJ01005281
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2623
2697
+
Asn
GTT
[ENA]
¢þ
>WENV183719039
PDWJ01009075
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5962
6036
+
Asn
GTT
[ENA]
¢þ
>WENV183721787
PDWJ01086406
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
196
270
+
Asn
GTT
[ENA]
¢þ
>WENV183722000
PDWJ01099054
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1246
1320
+
Asn
GTT
[ENA]
¢þ
>WENV170014882
AZIC01002180
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
674
750
+
Asn
GTT
[ENA]
¢þ
>WENV170176468
CEOS01081148
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1498
1574
+
Asn
GTT
[ENA]
¢þ
>WENV170369796
CETR01034347
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1833
1759
-
Asn
GTT
[ENA]
¢þ
>WENV170370360
CETR01092392
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
204
280
+
Asn
GTT
[ENA]
¢þ
>C181113298
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
1121925
1121851
-
Asn
GTT
-
¡û
>C191025397
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
34810
34884
+
Asn
GTT
-
¡û
>C09106196
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
88455
88531
+
Asn
GTT
[Ensembl]
¡û
>W1910693695
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
3974503
3974577
+
Asn
GTT
[ENA]
¡û
>W1910744947
MIER01000016
Bacteroidota
Reichenbachiella sp. MSK19-1 [MIER]
640051
639977
-
Asn
GTT
[ENA]
¡û
>W1910785616
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2754756
2754830
+
Asn
GTT
[ENA]
¡û
>SRA1032986
SRR035088.144448
454 Sequencing (SRP001809)
193
269
+
Asn
GTT
[SRA]
>SRA1036662
SRR035089.575249
454 Sequencing (SRP001810)
182
260
+
Asn
GTT
[SRA]
>SRA1054856
SRR035099.236003
454 Sequencing (SRP001820)
194
120
-
Asn
GTT
[SRA]
>C10102665
CP002046
Bacteroidota
Croceibacter atlanticus HTCC2559 [CP002046]
903813
903739
-
Asn
GTT
[Ensembl]
¡û
>W1511359618
JRYR01000015
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
190225
190149
-
Asn
GTT
[ENA]
¡û
>W1511359620
JRYR01000015
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
190023
189947
-
Asn
GTT
[ENA]
¡û
>W1511393391
JTAM01000004
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
178245
178171
-
Asn
GTT
[ENA]
¡û
>C161002915
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
3469940
3470016
+
Asn
GTT
[Ensembl]
¡û
>W1610850469
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
316455
316381
-
Asn
GTT
[ENA]
¡û
>W1610900931
LRXL01000026
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
696715
696641
-
Asn
GTT
[ENA]
¡û
>WENV080363
ABCO01000001
Unidentified eubacterium SCB49
182946
182868
-
Asn
GTT
[ENA]
>W1710514552
FNBA01000001
Bacteroidota
Ulvibacter litoralis [FNBA]
768794
768718
-
Asn
GTT
[ENA]
¡û
>W1710534989
FNSF01000005
Bacteroidota
Tenacibaculum sp. MAR_2009_124 [FNSF]
102648
102724
+
Asn
GTT
[ENA]
¡û
>W1710589281
FRAA01000002
Bacteroidota
Reichenbachiella agariperforans [FRAA]
356526
356602
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK