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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177923 (9 seq.)
>C171083835
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2092329
2092253
-
Met
CAT
-
¡û
>C171094247
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
1994333
1994257
-
Met
CAT
-
¡û
>WENV181090030
OEBA01256563
[OEBA] human metagenome; G_DNA_Stool
29
105
+
Ile2
CAT
[ENA]
¡û
>WENV181973066
OHAA01009619
[OHAA] human gut metagenome; faeces
1081
1005
-
Ile2
CAT
[ENA]
¡û
>W09119236
ACDQ01000003
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
899
975
+
Met
CAT
[ENA]
¡û
>W2010264339
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
368989
369065
+
Ile2
CAT
[ENA]
¡û
>C201107530
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
667153
667229
+
Ile2
CAT
-
¡û
>C231399320
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
1841429
1841353
-
Ile2
CAT
-
¡û
>C231399454
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
2085966
2085890
-
Ile2
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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