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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178288 (13 seq.)
>w027450
ABCE01000026
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
25249
25171
-
Met
CAT
[ENA]
¡û
>WENV181304907
OFID01013413
[OFID] marine metagenome; sea ice
24
99
+
Ile2
CAT
[ENA]
¡û
>WENV170014948
AZIC01005002
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
12409
12484
+
Met
CAT
[ENA]
¡û
>WENV170120895
CENL01017083
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
51976
52051
+
Met
CAT
[ENA]
¡û
>W2011610595
SJPP01000001
Planctomycetota
Planctomycetes bacterium CA54 [SJPP]
776789
776862
+
Ile2
CAT
[ENA]
¡û
>W2012143759
VTSR01000013
Planctomycetota
Gimesia sp. JC646 [VTSR]
39400
39327
-
Ile2
CAT
[ENA]
¡û
>C241044003
CP036276
Planctomycetota
Symmachiella dynata Mal52 [CP036276]
1542059
1541986
-
Ile2
CAT
-
¡û
>C241044012
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
1739487
1739560
+
Ile2
CAT
-
¡û
>C241044506
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
3235407
3235334
-
Ile2
CAT
-
¡û
>C241044529
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
1754288
1754363
+
Ile2
CAT
-
¡û
>C241069919
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
1734345
1734419
+
Ile2
CAT
-
¡û
>C241083589
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
2115497
2115424
-
Ile2
CAT
-
¡û
>C241083632
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
5965104
5965030
-
Ile2
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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