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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178360 (57 seq.)
>W1710870142
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
761971
762047
+
Arg
CCT
[ENA]
¡û
>W1710870380
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
51912
51988
+
Arg
CCT
[ENA]
¡û
>W1710870441
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
389396
389472
+
Arg
CCT
[ENA]
¡û
>W1710870870
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
287691
287615
-
Arg
CCT
[ENA]
¡û
>W1710870917
LMKX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
489985
490061
+
Arg
CCT
[ENA]
¡û
>W1710871199
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
63242
63166
-
Arg
CCT
[ENA]
¡û
>W1710871221
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
329296
329372
+
Arg
CCT
[ENA]
¡û
>W1710872285
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
595208
595132
-
Arg
CCT
[ENA]
¡û
>W1710877205
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
558086
558010
-
Arg
CCT
[ENA]
¡û
>WENV180022444
FTGF01001493
[FTGF] metagenome; soil
385
309
-
Arg
CCT
[ENA]
¡û
>WENV170559270
CXWL01117077
[CXWL] groundwater metagenome; biofilm material
694
618
-
Arg
CCT
[ENA]
¡û
>C191163752
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
3340146
3340222
+
Arg
CCT
-
¡û
>W1810476701
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
774846
774770
-
Arg
CCT
[ENA]
¡û
>W1810476777
QAOG01000004
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
13344
13268
-
Arg
CCT
[ENA]
¡û
>SRA1014237
SRR023845.49158
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
155
79
-
Arg
CCT
[SRA]
>SRA1014245
SRR023845.53979
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
66
-
Arg
CCT
[SRA]
>SRA1014267
SRR023845.66631
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
62
-
Arg
CCT
[SRA]
>SRA1014384
SRR023845.115706
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
8
84
+
Arg
CCT
[SRA]
>SRA1014566
SRR023845.203026
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
149
225
+
Arg
CCT
[SRA]
>SRA1014760
SRR023845.301793
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
127
51
-
Arg
CCT
[SRA]
>SRA1014919
SRR023845.381096
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
45
121
+
Arg
CCT
[SRA]
>SRA1015555
SRR023846.110383
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
194
118
-
Arg
CCT
[SRA]
>SRA1015576
SRR023846.116959
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
25
101
+
Arg
CCT
[SRA]
>SRA1016101
SRR023846.349765
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
114
+
Arg
CCT
[SRA]
>SRA1016172
SRR023846.378461
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
114
+
Arg
CCT
[SRA]
>SRA1016271
SRR023846.430295
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
193
117
-
Arg
CCT
[SRA]
>SRA1016289
SRR023846.437497
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
227
151
-
Arg
CCT
[SRA]
>W2010370482
CAHJWX010000186
Alphaproteobacteria
Sphingomonas bacterium [CAHJWX]
272
196
-
Arg
CCT
[ENA]
¡û
>W2011354892
RAPZ01000011
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
295923
295847
-
Arg
CCT
[ENA]
¡û
>W2011404458
RCWT01000010
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
871454
871530
+
Arg
CCT
[ENA]
¡û
>W2011404757
RCWY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
876834
876910
+
Arg
CCT
[ENA]
¡û
>W2011536232
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
859870
859946
+
Arg
CCT
[ENA]
¡û
>W2011578883
SGXR01000003
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
453074
453150
+
Arg
CCT
[ENA]
¡û
>W2011619360
SLUY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
296904
296828
-
Arg
CCT
[ENA]
¡û
>W2011623860
SLXW01000005
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
96552
96628
+
Arg
CCT
[ENA]
¡û
>W2011624065
SLYA01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
288355
288279
-
Arg
CCT
[ENA]
¡û
>W2011624199
SLYD01000007
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
7938
7862
-
Arg
CCT
[ENA]
¡û
>W2011624299
SLYF01000009
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
212774
212850
+
Arg
CCT
[ENA]
¡û
>W2012106769
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
1414063
1414139
+
Arg
CCT
[ENA]
¡û
>W2110243525
JACONT010000036
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
27436
27360
-
Arg
CCT
[ENA]
¡û
>W2110290997
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
794498
794574
+
Arg
CCT
[ENA]
¡û
>C211140899
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
2409542
2409466
-
Arg
CCT
-
¡û
>C211140947
CP061038
Alphaproteobacteria
Sphingomonas alpina DSM 22537 [CP061038]
1490929
1490853
-
Arg
CCT
-
¡û
>C231463749
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
124145
124221
+
Arg
CCT
-
¡û
>C241006616
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
1361956
1362032
+
Arg
CCT
-
¡û
>C241131755
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
1944981
1945057
+
Arg
CCT
-
¡û
>W1511390150
JSXI01000039
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
2049
1973
-
Arg
CCT
[ENA]
¡û
>W1610732488
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
761971
762047
+
Arg
CCT
[ENA]
¡û
>W1610732726
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
51912
51988
+
Arg
CCT
[ENA]
¡û
>W1610732787
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
389396
389472
+
Arg
CCT
[ENA]
¡û
>W1610733216
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
287691
287615
-
Arg
CCT
[ENA]
¡û
>W1610733263
LMKX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
489985
490061
+
Arg
CCT
[ENA]
¡û
>W1610733545
LMLC01000004
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
63242
63166
-
Arg
CCT
[ENA]
¡û
>W1610733567
LMLD01000010
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
329296
329372
+
Arg
CCT
[ENA]
¡û
>W1610734631
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
595208
595132
-
Arg
CCT
[ENA]
¡û
>W1610739551
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
558086
558010
-
Arg
CCT
[ENA]
¡û
>W1710571505
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
435232
435156
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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