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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178384 (28 seq.)
>W1710806136
LKAQ01000004
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
1917641
1917565
-
Arg
ACG
[ENA]
¡û
>WENV180043518
LQAI01000198
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
36
112
+
Arg
ACG
[ENA]
¡û
>WENV180043987
LQAJ01000177
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2340
2416
+
Arg
ACG
[ENA]
¡û
>WENV180043988
LQAJ01000177
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
2542
2618
+
Arg
ACG
[ENA]
¡û
>WENV183707405
PDWI01008281
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20646
20722
+
Arg
ACG
[ENA]
¡û
>WENV183746874
PPCM01000028
[PPCM] marine sediment metagenome; marine sediment
363755
363679
-
Arg
ACG
[ENA]
¡û
>WENV183747483
PPCM01003102
[PPCM] marine sediment metagenome; marine sediment
2557
2481
-
Arg
ACG
[ENA]
¡û
>WENV170419756
CEUM01137254
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5967
5891
-
Arg
ACG
[ENA]
¡û
>WENV170438330
CEUU01113424
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6515
6591
+
Arg
ACG
[ENA]
¡û
>WENV170440603
CEUV01114884
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1152
1076
-
Arg
ACG
[ENA]
¡û
>WENV170470272
CEVF01223264
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
153
77
-
Arg
ACG
[ENA]
¡û
>WENV170895018
MDTD01073937
[MDTD] marine metagenome; seawater
92431
92507
+
Arg
ACG
[ENA]
¡û
>C181227000
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
2862326
2862250
-
Arg
ACG
-
¡û
>W1911738017
QTZO01000005
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
202156
202080
-
Arg
ACG
[ENA]
¡û
>W2011303464
QTZO01000005
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
202156
202080
-
Arg
ACG
[ENA]
¡û
>W2011654880
SOBK01000002
Thermodesulfobacteriota
Pseudodesulfovibrio indicus DSM 101483 [SOBK]
453616
453692
+
Arg
ACG
[ENA]
¡û
>W2012442054
WUEH01000019
Thermodesulfobacteriota
Pseudodesulfovibrio sp. JC047 [WUEH]
66742
66818
+
Arg
ACG
[ENA]
¡û
>W2110515214
JAFMPN010000002
Thermodesulfobacteriota
Desulfovibrio sp. Huiquan2017 [JAFMPN]
32213
32137
-
Arg
ACG
[ENA]
¡û
>C231004581
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
1732769
1732845
+
Arg
ACG
-
¡û
>C231631058
CP120635
Thermodesulfobacteriota
Pseudodesulfovibrio sp. MCM B-1480 [CP120635]
755458
755382
-
Arg
ACG
-
¡û
>C241008560
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
1833606
1833682
+
Arg
ACG
-
¡û
>C241108976
CP046400
Thermodesulfobacteriota
Pseudodesulfovibrio cashew SRB007 [CP046400]
363907
363983
+
Arg
ACG
-
¡û
>C241149519
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
477211
477287
+
Arg
ACG
-
¡û
>C241149520
CP051216
Thermodesulfobacteriota
Pseudodesulfovibrio sp. zrk46 [CP051216]
477439
477515
+
Arg
ACG
-
¡û
>W11149143
AEUJ01000006
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
207821
207745
-
Arg
ACG
[ENA]
¡û
>C121008997
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3335855
3335779
-
Arg
ACG
[Ensembl]
¡û
>C161068260
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3703767
3703843
+
Arg
ACG
[Ensembl]
¡û
>C131017923
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
1572310
1572386
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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