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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178519 (86 seq.)
>W1710854645
LLXQ01000011
Actinomycetota
Mycobacterium kyorinense [LLXQ]
44948
45024
+
Pro
GGG
[ENA]
¡û
>W1711004022
LQIK01000006
Actinomycetota
Mycobacterium sp. GA-0227b [LQIK]
174721
174645
-
Pro
GGG
[ENA]
¡û
>W1711004063
LQIL01000002
Actinomycetota
Mycobacterium sp. GA-1999 [LQIL]
174672
174596
-
Pro
GGG
[ENA]
¡û
>W1711004113
LQIM01000003
Actinomycetota
Mycobacterium sp. IS-1556 [LQIM]
174019
173943
-
Pro
GGG
[ENA]
¡û
>W1711004187
LQIN01000050
Actinomycetota
Mycobacterium sp. IS-3022 [LQIN]
19765
19841
+
Pro
GGG
[ENA]
¡û
>W1711004199
LQIO01000005
Actinomycetota
Mycolicibacterium acapulense GA-1331 [LQIO]
97190
97266
+
Pro
GGG
[ENA]
¡û
>W1711004245
LQIP01000008
Actinomycetota
Mycolicibacterium acapulense GA-1379 [LQIP]
97266
97342
+
Pro
GGG
[ENA]
¡û
>W1711004314
LQIQ01000030
Actinomycetota
Mycolicibacterium acapulense GA-1683 [LQIQ]
2111
2037
-
Pro
GGG
[ENA]
¡û
>W1711004347
LQIR01000020
Actinomycetota
Mycobacterium lehmannii IS-1744 [LQIR]
37320
37396
+
Pro
GGG
[ENA]
¡û
>W1711004638
LQIX01000019
Actinomycetota
Mycobacterium sp. GA-1199 [LQIX]
54147
54223
+
Pro
GGG
[ENA]
¡û
>W1711007491
LQPE01000150
Actinomycetota
Mycobacterium kyorinense [LQPE]
18296
18220
-
Pro
GGG
[ENA]
¡û
>W1711277086
LZIQ01000066
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
14755
14679
-
Pro
GGG
[ENA]
¡û
>W1711279491
LZKP01000115
Actinomycetota
Mycobacterium sp. E740 [LZKP]
19874
19950
+
Pro
GGG
[ENA]
¡û
>W1711279602
LZKR01000197
Actinomycetota
Mycobacterium sp. 1245805.9 [LZKR]
17621
17697
+
Pro
GGG
[ENA]
¡û
>W1711285265
LZSD01000452
Actinomycetota
Mycolicibacterium elephantis 1477680.9 [LZSD]
922
998
+
Pro
GGG
[ENA]
¡û
>W1711285286
LZSE01000067
Actinomycetota
Mycobacterium sp. 1554424.7 [LZSE]
24880
24956
+
Pro
GGG
[ENA]
¡û
>W1711285408
LZSG01000040
Actinomycetota
Mycobacterium sp. 1164966.3 [LZSG]
28741
28665
-
Pro
GGG
[ENA]
¡û
>W1711285889
LZSQ01000054
Actinomycetota
Mycobacterium sp. 852002-51961_SCH5331710 [LZSQ]
44984
45060
+
Pro
GGG
[ENA]
¡û
>W1711286199
LZSW01000065
Actinomycetota
Mycobacterium sp. 852014-52144_SCH5372336 [LZSW]
169782
169708
-
Pro
GGG
[ENA]
¡û
>W1711428177
MIGZ01000149
Actinomycetota
Mycolicibacterium holsaticum [MIGZ]
3488
3412
-
Pro
GGG
[ENA]
¡û
>W1711525146
MLQM01000020
Actinomycetota
Mycobacterium talmoniae NE-TNMC-100812 [MLQM]
3404
3328
-
Pro
GGG
[ENA]
¡û
>W1711612573
MOWS01000035
Actinomycetota
Mycobacterium malmoense [MOWS]
287
211
-
Pro
GGG
[ENA]
¡û
>W1711772617
MVHN01000016
Actinomycetota
Mycolicibacterium celeriflavum [MVHN]
86445
86521
+
Pro
GGG
[ENA]
¡û
>W1711772813
MVHR01000036
Actinomycetota
Mycobacterium heidelbergense [MVHR]
28124
28198
+
Pro
GGG
[ENA]
¡û
>W1711772967
MVHV01000003
Actinomycetota
Mycobacterium malmoense [MVHV]
271783
271707
-
Pro
GGG
[ENA]
¡û
>C171002092
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
1416989
1417065
+
Pro
GGG
-
¡û
>W131159159
AQUV01000001
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
651364
651440
+
Pro
GGG
[ENA]
¡û
>W131159273
AQUX01000003
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
13329
13253
-
Pro
GGG
[ENA]
¡û
>W141238297
BBKA01000052
Actinomycetota
Mycobacterium kyorinense [BBKA]
18432
18356
-
Pro
GGG
[ENA]
¡û
>WENV170552078
CXWJ01037420
[CXWJ] wastewater metagenome; activated sludge
141
65
-
Pro
GGG
[ENA]
¢þ
>WENV170683761
LFRM01002773
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
858
934
+
Pro
GGG
[ENA]
¢þ
>C181001635
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
1650727
1650653
-
Pro
GGG
-
¡û
>C181143826
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
1261369
1261445
+
Pro
GGG
-
¡û
>C181226857
LT906483
Actinomycetota
Mycolicibacterium thermoresistibile NCTC10409 [LT906483]
2302654
2302579
-
Pro
GGG
-
¡û
>C191163664
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
1227259
1227183
-
Pro
GGG
-
¡û
>C191208031
LR134345
Actinomycetota
Mycobacteroides chelonae NCTC946 [LR134345]
2356482
2356556
+
Pro
GGG
-
¡û
>W1910002598
ATDQ01000027
Actinomycetota
Mycolicibacterium brumae DSM 44177 [ATDQ]
6604
6529
-
Pro
GGG
[ENA]
¡û
>C141002628
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
1421057
1420981
-
Pro
GGG
[Ensembl]
¡û
>W1910971935
NKCN01000018
Actinomycetota
Mycobacterium lehmannii CECT 8763 [NKCN]
98718
98644
-
Pro
GGG
[ENA]
¡û
>W1810052628
PDCN02000034
Actinomycetota
Mycolicibacterium brumae CIP1034565 [PDCN]
6427
6352
-
Pro
GGG
[ENA]
¡û
>W1810154974
PIZU01000026
Actinomycetota
Mycobacterium sp. QGD 101 [PIZU]
26827
26752
-
Pro
GGG
[ENA]
¡û
>W1810234005
PPEA01000430
Actinomycetota
Mycobacterium talmoniae ATCC BAA-2683 [PPEA]
2622
2547
-
Pro
GGG
[ENA]
¡û
>W1810568938
QEEZ01000004
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
126328
126404
+
Pro
GGG
[ENA]
¡û
>W1810577842
QEOO01000005
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
117885
117810
-
Pro
GGG
[ENA]
¡û
>C151012256
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
1413580
1413504
-
Pro
GGG
[Ensembl]
¡û
>C151045707
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
1440304
1440230
-
Pro
GGG
-
¡û
>W10106878
ACYW01000038
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
35536
35460
-
Pro
GGG
[ENA]
¡û
>W1510651735
CVTA01000025
Actinomycetota
Mycolicibacterium komanii GPK 1020 [CVTA]
21415
21339
-
Pro
GGG
[ENA]
¡û
>W1510651782
CVTB01000256
Actinomycetota
Mycolicibacterium malmesburyense WCM 7299 [CVTB]
20554
20630
+
Pro
GGG
[ENA]
¡û
>W11109167
ACYW01000038
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
35536
35460
-
Pro
GGG
[ENA]
¡û
>C11114910
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
2805088
2805012
-
Pro
GGG
[Ensembl]
¡û
>C161072402
CP014475
Actinomycetota
Mycolicibacterium phlei CCUG 21000 [CP014475]
2356449
2356523
+
Pro
GGG
-
¡û
>W121020686
AGVE01000049
Actinomycetota
Mycolicibacterium thermoresistibile ATCC 19527 [AGVE]
53056
53132
+
Pro
GGG
[ENA]
¡û
>W121060272
AJFJ01000100
Actinomycetota
Mycolicibacterium phlei RIVM601174 [AJFJ]
152505
152431
-
Pro
GGG
[ENA]
¡û
>W1610011494
ANBO01000043
Actinomycetota
Mycolicibacterium phlei DSM 43239 = CCUG 21000 [ANBO]
280244
280170
-
Pro
GGG
[ENA]
¡û
>W1610021382
ATDR01000045
Actinomycetota
Mycolicibacterium phlei DSM 43072 [ATDR]
18730
18804
+
Pro
GGG
[ENA]
¡û
>W1610021408
ATHW01000037
Actinomycetota
Mycolicibacterium phlei DSM 43070 [ATHW]
58301
58227
-
Pro
GGG
[ENA]
¡û
>W1610070204
BCTB01000013
Actinomycetota
Mycolicibacterium thermoresistibile [BCTB]
34440
34364
-
Pro
GGG
[ENA]
¡û
>W1610435344
FJNX01000046
Actinomycetota
Mycolicibacterium brumae [FJNX]
7888
7812
-
Pro
GGG
[ENA]
¡û
>W1610503358
FLMU01000032
Actinomycetota
Mycolicibacterium acapulense acapulcensis [FLMU]
65853
65929
+
Pro
GGG
[ENA]
¡û
>W1610526844
JPUH01000020
Actinomycetota
Mycolicibacterium phlei DSM 43071 [JPUH]
18717
18791
+
Pro
GGG
[ENA]
¡û
>W1610716922
LLXQ01000011
Actinomycetota
Mycobacterium kyorinense [LLXQ]
44948
45024
+
Pro
GGG
[ENA]
¡û
>W1610854616
LQIK01000006
Actinomycetota
Mycobacterium sp. GA-0227b [LQIK]
174721
174645
-
Pro
GGG
[ENA]
¡û
>W1610854657
LQIL01000002
Actinomycetota
Mycobacterium sp. GA-1999 [LQIL]
174672
174596
-
Pro
GGG
[ENA]
¡û
>W1610854707
LQIM01000003
Actinomycetota
Mycobacterium sp. IS-1556 [LQIM]
174019
173943
-
Pro
GGG
[ENA]
¡û
>W1610854781
LQIN01000050
Actinomycetota
Mycobacterium sp. IS-3022 [LQIN]
19765
19841
+
Pro
GGG
[ENA]
¡û
>W1610854793
LQIO01000005
Actinomycetota
Mycolicibacterium acapulense GA-1331 [LQIO]
97190
97266
+
Pro
GGG
[ENA]
¡û
>W1610854839
LQIP01000008
Actinomycetota
Mycolicibacterium acapulense GA-1379 [LQIP]
97266
97342
+
Pro
GGG
[ENA]
¡û
>W1610854908
LQIQ01000030
Actinomycetota
Mycolicibacterium acapulense GA-1683 [LQIQ]
2111
2037
-
Pro
GGG
[ENA]
¡û
>W1610854941
LQIR01000020
Actinomycetota
Mycobacterium lehmannii IS-1744 [LQIR]
37320
37396
+
Pro
GGG
[ENA]
¡û
>W1610855232
LQIX01000019
Actinomycetota
Mycobacterium sp. GA-1199 [LQIX]
54147
54223
+
Pro
GGG
[ENA]
¡û
>W1611036371
LZIQ01000066
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
14755
14679
-
Pro
GGG
[ENA]
¡û
>W1611038776
LZKP01000115
Actinomycetota
Mycobacterium sp. E740 [LZKP]
19874
19950
+
Pro
GGG
[ENA]
¡û
>W1611038887
LZKR01000197
Actinomycetota
Mycobacterium sp. 1245805.9 [LZKR]
17621
17697
+
Pro
GGG
[ENA]
¡û
>W1611042826
LZSD01000452
Actinomycetota
Mycolicibacterium elephantis 1477680.9 [LZSD]
922
998
+
Pro
GGG
[ENA]
¡û
>W1611042847
LZSE01000067
Actinomycetota
Mycobacterium sp. 1554424.7 [LZSE]
24880
24956
+
Pro
GGG
[ENA]
¡û
>W1611042969
LZSG01000040
Actinomycetota
Mycobacterium sp. 1164966.3 [LZSG]
28741
28665
-
Pro
GGG
[ENA]
¡û
>W1611043450
LZSQ01000054
Actinomycetota
Mycobacterium sp. 852002-51961_SCH5331710 [LZSQ]
44984
45060
+
Pro
GGG
[ENA]
¡û
>W1611043760
LZSW01000065
Actinomycetota
Mycobacterium sp. 852014-52144_SCH5372336 [LZSW]
169782
169708
-
Pro
GGG
[ENA]
¡û
>W1710018077
ATDR01000045
Actinomycetota
Mycolicibacterium phlei DSM 43072 [ATDR]
18730
18804
+
Pro
GGG
[ENA]
¡û
>W1710018103
ATHW01000037
Actinomycetota
Mycolicibacterium phlei DSM 43070 [ATHW]
58301
58227
-
Pro
GGG
[ENA]
¡û
>W1710067577
BCTB01000013
Actinomycetota
Mycolicibacterium thermoresistibile [BCTB]
34440
34364
-
Pro
GGG
[ENA]
¡û
>W1710435080
FJNX01000046
Actinomycetota
Mycolicibacterium brumae [FJNX]
7888
7812
-
Pro
GGG
[ENA]
¡û
>W1710496438
FLMU01000032
Actinomycetota
Mycolicibacterium acapulense acapulcensis [FLMU]
65853
65929
+
Pro
GGG
[ENA]
¡û
>W1710598773
FTOF01000002
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
233725
233649
-
Pro
GGG
[ENA]
¡û
>W1710628398
JPUH01000020
Actinomycetota
Mycolicibacterium phlei DSM 43071 [JPUH]
18717
18791
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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