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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179150 (13 seq.)
>A178000094
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2273440
2273621
+
Trp
CCA
-
¡û
>A178000285
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1342627
1342807
+
Trp
CCA
-
¡û
>A178000398
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1354060
1354240
+
Trp
CCA
-
¡û
>A178000521
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2993306
2993486
+
Trp
CCA
-
¡û
>At0749
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
646395
646575
+
Trp
CCA
[Ensembl]
¡û
>A243000157
CP019154
Methanobacteriota
Haloarcula taiwanensis Taiwanensis [CP019154, CP019155]
1325398
1325578
+
Trp
CCA
-
¡û
>A243000448
CP039138
Methanobacteriota
Haloarcula marismortui ATCC 43049 [CP039138]
237188
237368
+
Trp
CCA
-
¡û
>A243000459
CP039375
Methanobacteriota
Halomicrobium mukohataei JP60 [CP039375]
2916584
2916765
+
Trp
CCA
-
¡û
>A243000471
CP044129
Methanobacteriota
Halomicrobium sp. LC1Hm [CP044129]
1348839
1348659
-
Trp
CCA
-
¡û
>A243000476
CP045142
Methanobacteriota
Halomicrobium sp. ZPS1 [CP045142]
2916591
2916772
+
Trp
CCA
-
¡û
>A243000638
CP119787
Methanobacteriota
Haloarcula halobia XH51 [CP119787]
2197396
2197217
-
Trp
CCA
-
¡û
>A243000644
CP129992
Methanobacteriota
Salinibaculum sp. KK48 [CP129992]
2395662
2395838
+
Trp
CCA
-
¡û
>A243000810
CP142027
Methanobacteriota
Haloarcula sp. GH36 [CP142027]
2965448
2965268
-
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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