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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179913 (31 seq.)
>WENV180396364
OBPV01000296
[OBPV] marine metagenome; ENVO:00002010
1155
1079
-
Arg
CCT
[ENA]
¡û
>WENV180590578
OCOT01077579
[OCOT] marine metagenome; ENVO:00002010
255
331
+
Arg
CCT
[ENA]
¡û
>WENV180689127
OCZA010542534
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
1
-
Arg
CCT
[ENA]
¡û
>W08011231
ABSK01000023
Alphaproteobacteria
Octadecabacter arcticus 238 [ABSK]
252365
252292
-
Arg
CCT
[ENA]
¡û
>WENV181392419
OFRW01045616
[OFRW] seawater metagenome; seawater
321
245
-
Arg
CCT
[ENA]
¡û
>WENV182542210
OJAV01012411
[OJAV] seawater metagenome; Sea water
174
250
+
Arg
CCT
[ENA]
¡û
>WENV182546205
OJBO01002430
[OJBO] seawater metagenome; Sea water
575
499
-
Arg
CCT
[ENA]
¡û
>WENV182549198
OJBX01041456
[OJBX] seawater metagenome; Sea water
56
132
+
Arg
CCT
[ENA]
¡û
>WENV182555925
OJDD01016286
[OJDD] seawater metagenome; Sea water
575
499
-
Arg
CCT
[ENA]
¡û
>WENV182567534
OJEO01005248
[OJEO] seawater metagenome; Sea water
588
664
+
Arg
CCT
[ENA]
¡û
>WENV182568910
OJEX01001315
[OJEX] seawater metagenome; Sea water
1712
1636
-
Arg
CCT
[ENA]
¡û
>WENV182579759
OJGT01000914
[OJGT] seawater metagenome; Sea water
419
495
+
Arg
CCT
[ENA]
¡û
>WENV182592761
OJIR01020630
[OJIR] seawater metagenome; Sea water
527
451
-
Arg
CCT
[ENA]
¡û
>WENV183615659
OOEB01079369
[OOEB] marine metagenome; sea ice
200
124
-
Arg
CCT
[ENA]
¡û
>WENV183627150
OOGK01047462
[OOGK] marine metagenome; seawater
321
245
-
Arg
CCT
[ENA]
¡û
>WENV170015916
AZIJ01004165
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1103
1027
-
Arg
CCT
[ENA]
¡û
>WENV170363948
CETM01196367
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
77
+
Arg
CCT
[ENA]
¡û
>WENV170783711
MAAC01018409
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
77453
77529
+
Arg
CCT
[ENA]
¡û
>WENV170813913
MDSW01208471
[MDSW] marine metagenome; seawater
2615
2691
+
Arg
CCT
[ENA]
¡û
>W141485045
JFZB01000030
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
3436
3512
+
Arg
CCT
[ENA]
¡û
>C191084695
CP032125
Alphaproteobacteria
Profundibacter amoris BAR1 [CP032125]
342576
342652
+
Arg
CCT
-
¡û
>C191103733
CP033219
Alphaproteobacteria
Parasedimentitalea marina W43 [CP033219]
4076078
4076002
-
Arg
CCT
-
¡û
>C191182615
CP040753
Alphaproteobacteria
Sulfitobacter sp. BSw21498 [CP040753]
2398011
2397935
-
Arg
CCT
-
¡û
>W1910285319
FREZ01000006
Alphaproteobacteria
Ruegeria sp. Alg231-54 [FREZ]
186794
186870
+
Arg
CCT
[ENA]
¡û
>W1810721613
QNSD01000001
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
135654
135730
+
Arg
CCT
[ENA]
¡û
>W2010395582
FREZ01000006
Alphaproteobacteria
Ruegeria sp. Alg231-54 [FREZ]
186794
186870
+
Arg
CCT
[ENA]
¡û
>W2011397691
RCHI01000002
Alphaproteobacteria
Rhodobacter sp. BO-81 [RCHI]
187326
187250
-
Arg
CCT
[ENA]
¡û
>W2110611846
JAHKPU010000020
Alphaproteobacteria
Pacificibacter marinus D2R04 [JAHKPU]
86340
86264
-
Arg
CCT
[ENA]
¡û
>C211127346
CP060010
Alphaproteobacteria
Cognatishimia activa ECT2AJA-044 [CP060010]
1162912
1162988
+
Arg
CCT
-
¡û
>C131005981
CP003742
Alphaproteobacteria
Octadecabacter arcticus 238 [CP003742]
4408123
4408047
-
Arg
CCT
[Ensembl]
¡û
>W1610946199
LUYN01000034
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
57038
57114
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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