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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180151 (89 seq.)
>W1710944106
LOQE01000001
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
169620
169536
-
Leu
GAG
[ENA]
¡û
>W1711135991
LUZR01000066
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
19942
19858
-
Leu
GAG
[ENA]
¡û
>W1711268806
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
522971
523055
+
Leu
GAG
[ENA]
¡û
>W1711387436
MEGQ01000023
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
20643
20727
+
Leu
GAG
[ENA]
¡û
>W1711504511
MKUQ01000010
Betaproteobacteria
Burkholderiales bacterium 70-64 [MKUQ]
181614
181530
-
Leu
GAG
[ENA]
¡û
>W131178092
ARLH01000085
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
54377
54293
-
Leu
GAG
[ENA]
¡û
>W1712110544
NJIH01000010
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
70768
70684
-
Leu
GAG
[ENA]
¡û
>C171103242
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
2547860
2547944
+
Leu
GAG
-
¡û
>WENV180103086
OAPA01001601
[OAPA] marine metagenome; ENVO:00002010
910
826
-
Leu
GAG
[ENA]
¢þ
>WENV180114280
OAPS01002566
[OAPS] marine metagenome; sea water
1069
1153
+
Leu
GAG
[ENA]
¢þ
>WENV180209628
OBAL01008593
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
99
15
-
Leu
GAG
[ENA]
¢þ
>WENV180360827
OBNU01032777
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
36
120
+
Leu
GAG
[ENA]
¢þ
>WENV180369101
OBOG01025507
[OBOG] marine metagenome; seawater
488
404
-
Leu
GAG
[ENA]
¢þ
>WENV180377459
OBON01026660
[OBON] marine metagenome; sea water
645
561
-
Leu
GAG
[ENA]
¢þ
>WENV180635438
OCRD01034105
[OCRD] marine metagenome; seawater
371
287
-
Leu
GAG
[ENA]
¢þ
>WENV181231903
OFEK01084741
[OFEK] activated sludge metagenome; Anaerobic digester
320
404
+
Leu
GAG
[ENA]
¢þ
>WENV181411007
OGCI01010407
[OGCI] hot springs metagenome; Hot spring water
1667
1583
-
Leu
GAG
[ENA]
¢þ
>W141139309
AWNL01000051
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
986
902
-
Leu
GAG
[ENA]
¡û
>WENV181414192
OGCL01000088
[OGCL] hot springs metagenome; Hot spring water
84774
84858
+
Leu
GAG
[ENA]
¢þ
>C08001865
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
1682300
1682384
+
Leu
GAG
[Ensembl]
¡û
>WENV182578770
OJGP01002171
[OJGP] seawater metagenome; Sea water
2428
2344
-
Leu
GAG
[ENA]
¢þ
>W141277148
JAEJ01000018
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
19048
18964
-
Leu
GAG
[ENA]
¡û
>W141277445
JAEP01000003
Betaproteobacteria
Bordetella petrii J51 [JAEP]
198068
197984
-
Leu
GAG
[ENA]
¡û
>ENV08000754
ABMI01078031
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
103
19
-
Leu
GAG
[ENA]
¡û
>WENV183727856
PJTP01001474
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
195
279
+
Leu
GAG
[ENA]
¢þ
>WENV183741211
PJUF01057821
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
265
181
-
Leu
GAG
[ENA]
¢þ
>WENV170018719
BBPD01000496
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
47475
47391
-
Leu
GAG
[ENA]
¢þ
>WENV170019808
BBPE01000709
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
24338
24254
-
Leu
GAG
[ENA]
¢þ
>WENV170621066
FUWD013047935
[FUWD] metagenome; unknown
654
570
-
Leu
GAG
[ENA]
¢þ
>WENV170629233
FUWD013264698
[FUWD] metagenome; unknown
654
570
-
Leu
GAG
[ENA]
¢þ
>WENV170652826
JRYH01038928
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
959
1043
+
Leu
GAG
[ENA]
¢þ
>WENV170706192
LNAP01001618
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
15145
15061
-
Leu
GAG
[ENA]
¢þ
>WENV170706339
LNAP01002248
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2941
3025
+
Leu
GAG
[ENA]
¢þ
>WENV170706655
LNAP01005245
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
116
200
+
Leu
GAG
[ENA]
¢þ
>WENV170706838
LNAP01007464
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
9117
9033
-
Leu
GAG
[ENA]
¢þ
>WENV170707512
LNAP01023508
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
373
457
+
Leu
GAG
[ENA]
¢þ
>WENV170708090
LNAP01049337
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1629
1545
-
Leu
GAG
[ENA]
¢þ
>C181034356
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3170140
3170056
-
Leu
GAG
-
¡û
>C181169423
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
2326071
2325987
-
Leu
GAG
-
¡û
>C191004286
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
1216701
1216785
+
Leu
GAG
-
¡û
>C191007515
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1185285
1185369
+
Leu
GAG
-
¡û
>C191012245
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3344392
3344308
-
Leu
GAG
-
¡û
>C191023124
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
389163
389247
+
Leu
GAG
-
¡û
>W1910890545
NEVI01000005
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
204868
204952
+
Leu
GAG
[ENA]
¡û
>W1910890639
NEVK01000003
Betaproteobacteria
Bordetella genomosp. 7 7 AU18089 [NEVK]
373695
373779
+
Leu
GAG
[ENA]
¡û
>W1910890850
NEVO01000004
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
240899
240983
+
Leu
GAG
[ENA]
¡û
>W1910890958
NEVQ01000008
Betaproteobacteria
Bordetella genomosp. 4 4 AU9919 [NEVQ]
131742
131826
+
Leu
GAG
[ENA]
¡û
>W1910891111
NEVT01000003
Betaproteobacteria
Bordetella genomosp. 2 2 AU8256 [NEVT]
679927
680011
+
Leu
GAG
[ENA]
¡û
>W1911636093
PVTV01000014
Betaproteobacteria
Jezberella montanilacus MWH-P2sevCIIIb [PVTV]
211202
211118
-
Leu
GAG
[ENA]
¡û
>W1911701428
QNUI01000019
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
16926
17010
+
Leu
GAG
[ENA]
¡û
>W1911702176
QOAZ01000005
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
68896
68980
+
Leu
GAG
[ENA]
¡û
>SRA1000691
SRR001046.92295
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
103
19
-
Leu
GAG
[SRA]
>W1810062094
PDNV01000006
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
327727
327643
-
Leu
GAG
[ENA]
¡û
>W1810062116
PDNW01000001
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
207299
207383
+
Leu
GAG
[ENA]
¡û
>W1810273273
PSNX01000009
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
53807
53723
-
Leu
GAG
[ENA]
¡û
>SRA1052245
SRR035098.166590
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1052587
SRR035098.232658
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1053326
SRR035098.382825
454 Sequencing (SRP001819)
418
502
+
Leu
GAG
[SRA]
>ENV09004077
ADIG01005316
Groundwater metagenome 4000601.lucy.pga.C1
555
639
+
Leu
GAG
[ENA]
¡û
>W10105771
ACXV01000001
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
189575
189659
+
Leu
GAG
[ENA]
¡û
>C10113348
CP002021
Betaproteobacteria
Thiomonas intermedia [CP002021]
2428133
2428049
-
Leu
GAG
[Ensembl]
¡û
>W11108091
ACXV01000001
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
189575
189659
+
Leu
GAG
[ENA]
¡û
>W1510741281
CYHF01000006
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
174378
174462
+
Leu
GAG
[ENA]
¡û
>W1511310853
JPQP01000022
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
537
453
-
Leu
GAG
[ENA]
¡û
>W1511403227
JTKY01000029
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
55205
55121
-
Leu
GAG
[ENA]
¡û
>C121016364
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
2593899
2593815
-
Leu
GAG
[Ensembl]
¡û
>C161109110
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
175609
175525
-
Leu
GAG
[Ensembl]
¡û
>W1610074137
BCWK01000017
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
18373
18457
+
Leu
GAG
[ENA]
¡û
>W1610085405
CTRI01000027
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
87467
87383
-
Leu
GAG
[ENA]
¡û
>W1610085434
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
229427
229511
+
Leu
GAG
[ENA]
¡û
>W1610085487
CTRK01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
84824
84740
-
Leu
GAG
[ENA]
¡û
>W1610085528
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
84821
84737
-
Leu
GAG
[ENA]
¡û
>W1610085578
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1610447539
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1610447645
FKBT01000025
Betaproteobacteria
Bordetella trematum [FKBT]
150193
150277
+
Leu
GAG
[ENA]
¡û
>W1610632422
LIPV01000006
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
174378
174462
+
Leu
GAG
[ENA]
¡û
>W1610800406
LOQE01000001
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
169620
169536
-
Leu
GAG
[ENA]
¡û
>W1610947111
LUZR01000066
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
19942
19858
-
Leu
GAG
[ENA]
¡û
>W1611029618
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
522971
523055
+
Leu
GAG
[ENA]
¡û
>W1710071255
BCWK01000017
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
18373
18457
+
Leu
GAG
[ENA]
¡û
>W1710089994
CTRI01000027
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
87467
87383
-
Leu
GAG
[ENA]
¡û
>W1710090023
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
229427
229511
+
Leu
GAG
[ENA]
¡û
>W1710090076
CTRK01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
84824
84740
-
Leu
GAG
[ENA]
¡û
>W1710090117
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
84821
84737
-
Leu
GAG
[ENA]
¡û
>W1710090167
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1710447167
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1710447273
FKBT01000025
Betaproteobacteria
Bordetella trematum [FKBT]
150193
150277
+
Leu
GAG
[ENA]
¡û
>W1710586419
FQXE01000011
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
79746
79830
+
Leu
GAG
[ENA]
¡û
>W1710766808
LIPV01000006
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
174378
174462
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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